Lumiprobe citation list
Here is a list of research publications citing use of Lumiprobe products, sorted by product.
1-Ethynyl pyrene
- Vega, B.; Wondraczek, H.; Bretschneider, L.; Näreoja, T.; Fardim, P.; Heinze, T. Preparation of reactive fibre interfaces using multifunctional cellulose derivatives. Carbohydrate Polymers, 2015, 132, 261–273. doi: 10.1016/j.carbpol.2015.05.048
3-Ethynylperylene
- Beri, D.; Jakoby, M.; Howard, I.A.; Busko, D.; Richards, B.S.; Turshatov, A. Improved photon absorption in dye-functionalized silicon nanocrystals synthesized via microwave-assisted hydrosilylation. Dalton Transactions, 2020, 49(7), 2290–2299. doi: 10.1039/c9dt04497c
- Beri, D.; Jakoby, M.; Busko, D.; Richards, B.S.; Turshatov, A. Enhancing Singlet Oxygen Generation in Conjugates of Silicon Nanocrystals and Organic Photosensitizers. Frontiers in Chemistry, 2020, 8, 567. doi: 10.3389/fchem.2020.00567
AF 343 (Coumarin)-X-NHS ester
- Zheng, L.; Zhao, H.; Han, Y.; Qian, H.; Vukovic, L.; Mecinović, J.; Král, P.; Huck, W.T.S. Catalytic transport of molecular cargo using diffusive binding along a polymer track. Nature Chemistry, 2019, 11(4), 359–366. doi: 10.1038/s41557-018-0204-7
AF 384 (PEP) azide
- Taskova, M.; Astakhova, K. Fluorescent Oligonucleotides with Bis(prop-2-yn-1-yloxy)butane-1,3-diol Scaffold Rapidly Detect Disease-Associated Nucleic Acids. Bioconjugate Chemistry, 2019, 30(12), 3007–3012. doi: 10.1021/acs.bioconjchem.9b00746
AF 430 maleimide
- Yoo, W.; Song, Y.W.; Kim, J.; Ahn, J.; Kim, J.; Shin, Y.; Ryu, J.-K.; Kim, K.K. Molecular basis for SOX2-dependent regulation of super-enhancer activity. Nucleic Acids Research, 2023, 51(22), 11999-12019. doi: 10.1093/nar/gkad908
AF 488 DBCO
- Xu, W.; He, M.; Lu, Q. Fibronectin Connecting Cell Sheet Based on Click Chemistry for Wound Repair. Advanced Science, 2024, 11(11), 2306746. doi: 10.1002/advs.202306746
- Xia, Q.; Perera, H. A.; Bolarinho, R.; Piskulich, Z. A.; Guo, Z.; Yin, J.; He, H.; Li, M.; Ge, X.; Cui, Q.; Ramström, O.; Yan, M.; Cheng, J.-X. Click-Free Imaging of Carbohydrate Trafficking in Live Cells Using an Azido Photothermal Probe. Science Advances, 2024, 10(34), eadq0294. doi: 10.1126/sciadv.adq0294
AF 488 NHS ester
- Schöpf, F.; Marongiu, G.L.; Milaj, K.; Sprink, T.; Kikhney, J.; Moter, A.; Roderer, D. Structural basis of Fusobacterium nucleatumadhesin Fap2 interaction with receptors on cancer and immune cells. bioRxiv, 2024, preprint. doi: 10.1101/2024.02.28.582045
- Fedorova, N.; Sokolov, A.; Trashkov, A.; Varfolomeeva, E. The preparation of samples for studying neutrophils without their isolation. Biological Communications, 2023, 68(3), 145-150. doi: 10.21638/spbu03.2023.302
- Białobrzewski, M.K.; Klepka, B.P.; Michaś, A.; Cieplak-Rotowska, M.K.; Staszałek, Z.; Niedźwiecka, A. Diversity of hydrodynamic radii of intrinsically disordered proteins. European Biophysics Journal, 2023, 52, 607-618. doi: 10.1007/s00249-023-01683-8
- Makri Pistikou, A.-M.; Cremers, G.A.O.; Nathalia, B.L.; Meuleman, T.J.; Bögels, B.W.A.; Eijkens, B.V.; de Dreu, A.; Bezembinder, M.T.H.; Stassen, O.M.J.A.; Bouten, C.C.V.; Merkx, M.; Jerala, R.; de Greef, T.F.A. Engineering a scalable and orthogonal platform for synthetic communication in mammalian cells. Nature Communications, 2023, 14, 7001. doi: 10.1038/s41467-023-42810-5
- Wiest, M.J.; Baert, L.; Gu, C.; Gayler, K.M.; Ham, H.; Gorvel, L.; Keddis, M.T.; Griffing, L.W.; Joo, H.M.; Gorvel, J.-P.; Billadeau, D.D.; Kane, R.R.; Oh, S.K. Endosomal trafficking inhibitor EGA can control TLR7-mediated IFNα expression by human plasmacytoid dendritic cells. Frontiers in Immunology, 2023, 14, 1202197. doi: 10.3389/fimmu.2023.1202197
- Khramtsov, Y.V.; Ulasov, A.V.; Slastnikova, T.A.; Rosenkranz, A.A.; Lupanova, T.N.; Georgiev, G.P.; Sobolev, A.S. Modular Nanotransporters Delivering Biologically Active Molecules to the Surface of Mitochondria. Pharmaceutics, 2023, 15(12), 2687. doi: 10.3390/pharmaceutics15122687
- Shramova, E.I.; Frolova, A.Y..; Filimonova, V.P.; Deyev, S.M.; Proshkina, G.M. System for Self-excited Targeted Photodynamic Therapy Based on the Multimodal Protein DARP-NanoLuc-SOPP3. Acta Naturae, 2023, 15(4), 100-110. doi: 10.32607/actanaturae.27331
- Khramtsov, Y.V.; Ulasov, A.V.; Lupanova, T.N.; Slastnikova, T.A.; Rosenkranz, A.A.; Bunin, E.S.; Georgiev, G.P.; Sobolev, A.S. Intracellular Degradation of SARS-CoV-2 N-Protein Caused by Modular Nanotransporters Containing Anti-N-Protein Monobody and a Sequence That Recruits the Keap1 E3 Ligase. Pharmaceutics, 2023, 16(1), 4. doi: 10.3390/pharmaceutics16010004
- Tähtinen, V.; Gulumkar, V.; Maity, S. K.; Yliperttula, A.-M.; Siekkinen, S.; Laine, T.; Lisitsyna, E.; Haapalehto, I.; Viitala, T.; Vuorimaa-Laukkanen, E.; Yliperttula, M.; Virta, P. Assembly of Bleomycin Saccharide-Decorated Spherical Nucleic Acids. Bioconjugate Chem., 2022, 33(1), 206–218. doi: 10.1021/acs.bioconjchem.1c00539
- Backes, I. M.; Byrd, B. K.; Slein, M. D.; Patel, C. D.; Taylor, S. A.; Garland, C. R.; MacDonald, S. W.; Balazs, A. B.; Davis, S. C.; Ackerman, M. E.; Leib, D. A. Maternally Transferred MAbs Protect Neonatal Mice from HSV-Induced Mortality and Morbidity. Journal of Experimental Medicine, 2022, 219(12), e20220110. doi: 10.1084/jem.20220110
- Lin, G.; Huang, J.; Zhang, M.; Chen, S.; Zhang, M. Chitosan-Crosslinked Low Molecular Weight PEI-Conjugated Iron Oxide Nanoparticle for Safe and Effective DNA Delivery to Breast Cancer Cells. Nanomaterials, 2022, 12(4), 584. doi: 10.3390/nano12040584
- Białas, N.; Sokolova, V.; van der Meer, S. B.; Knuschke, T.; Ruks, T.; Klein, K.; Westendorf, A. M.; Epple, M. Bacteria (E. Coli) Take up Ultrasmall Gold Nanoparticles (2 Nm) as Shown by Different Optical Microscopic Techniques (CLSM, SIM, STORM). Nano Select, 2022, 3(10), 1407–1420. doi: 10.1002/nano.202200049
- Backes, I. M.; Byrd, B. K.; Slein, M. D.; Patel, C. D.; Taylor, S. A.; Garland, C. R.; MacDonald, S. W.; Balazs, A. B.; Davis, S. C.; Ackerman, M. E.; Leib, D. A. Maternally Transferred MAbs Protect Neonatal Mice from HSV-Induced Mortality and Morbidity. Journal of Experimental Medicine, 2022, 219(12), e20220110. doi: 10.1084/jem.20220110
- Wang, X.; Ansari, A.; Pierre, V.; Young, K.; Kothapalli, C.R.; von Recum, H.A.; Senyo, S.E. Injectable Extracellular Matrix Microparticles Promote Heart Regeneration in Mice with Post-ischemic Heart Injury. Advanced Healthcare Materials, 2022, 11(8), e2102265. doi: 10.1002/adhm.202102265
- Sukhanova, M.V.; Anarbaev, R.O.; Maltseva, E.A.; Pastré, D.; Lavrik, O.I. FUS Microphase Separation: Regulation by Nucleic Acid Polymers and DNA Repair Proteins. International Journal of Molecular Sciences, 2022, 23(21), 13200. doi: 10.3390/ijms232113200
- Eliseev, I.E.; Ukrainskaya, V.M.; Yudenko, A.N.; Mikushina, A.D.; Shmakov, S.V.; Afremova, A.I.; Ekimova, V.M.; Vronskaia, A.A.; Knyazev, N.A.; Shamova, O.V. Targeting ErbB3 Receptor in Cancer with Inhibitory Antibodies from Llama. Biomedicines, 2021, 9(9), 1106. doi: 10.3390/biomedicines9091106
- Atalis, A.; Dixon, J.B.; Roy, K. Soluble and Microparticle-based Delivery of TLR4 and TLR9 Agonists Differentially Modulate 3D Chemotaxis of Bone Marrow-derived Dendritic Cells. Advanced Healthcare Materials, 2021, 10(15), e2001899. doi: 10.1002/adhm.202001899
- Vasil’eva, I.; Moor, N.; Anarbaev, R.; Kutuzov, M.; Lavrik, O. Functional Roles of PARP2 in Assembling Protein–Protein Complexes Involved in Base Excision DNA Repair. International Journal of Molecular Sciences, 2021, 22(9), 4679. doi: 10.3390/ijms22094679
- Sapozhnikova, K.A.; Misyurin, V.A.; Ryazantsev, D.Y.; Kokin, E.A.; Finashutina, Y.P.; Alexeeva, A.V.; Ivanov, I.A.; Kocharovskaya, M.V.; Tikhonova, N.A.; Popova, G.P.; Alferova, V.A.; Ustinov, A.V.; Korshun, V.A.; Brylev, V.A. Sensitive Immunofluorescent Detection of the PRAME Antigen Using a Practical Antibody Conjugation Approach. International Journal of Molecular Sciences, 2021, 22(23), 12845. doi: 10.3390/ijms222312845
- Gori, A.; Romanato, A.; Bergamaschi, G.; Strada, A.; Gagni, P.; Frigerio, R.; Brambilla, D.; Vago, R.; Galbiati, S.; Picciolini, S.; Bedoni, M.; Daaboul, G.G.; Chiari, M.; Cretich, M. Membrane-binding peptides for extracellular vesicles on-chip analysis. Journal of Extracellular Vesicles, 2020, 9(1), 1751428. doi: 10.1080/20013078.2020.1751428
- Huang, D.; Yue, F.; Qiu, J.; Deng, M.; Kuang, S. Polymeric nanoparticles functionalized with muscle-homing peptides for targeted delivery of phosphatase and tensin homolog inhibitor to skeletal muscle. Acta Biomaterialia, 2020, 118, 196–206. doi: 10.1016/j.actbio.2020.10.009
AF 488 azide
- Baleva, M.V.; Piunova, U.; Chicherin, I.; Vasilev, R.; Levitskii, S.; Kamenski, P. Mitochondrial Protein SLIRP Affects Biosynthesis of Cytochrome c Oxidase Subunits in HEK293T Cells. International Journal of Molecular Sciences, 2024, 25(1), 93. doi: 10.3390/ijms25010093
- Ivanova, A.; Gruzova, O.; Ermolaeva, E.; Astakhova, O.; Itaman, S.; Enikolopov, G.; Lazutkin, A. Synthetic Thymidine Analog Labeling without Misconceptions. Cells, 2022, 11(12), 1888. doi: 10.3390/cells11121888
AF 568 NHS ester
- Cepeda Diaz, A.K.; Rudlaff, R.M.; Farringer, M.; Dvorin, J.D. Essential function of alveolin Pf IMC1g in the Plasmodium falciparum asexual blood stage. mBio, 2023, 14(5), e01507-23. doi: 10.1128/mbio.01507-23
- Khramtsov, Y.V.; Ulasov, A.V.; Slastnikova, T.A.; Rosenkranz, A.A.; Lupanova, T.N.; Georgiev, G.P.; Sobolev, A.S. Modular Nanotransporters Delivering Biologically Active Molecules to the Surface of Mitochondria. Pharmaceutics, 2023, 15(12), 2687. doi: 10.3390/pharmaceutics15122687
AF 568 azide
- Huber, J.; Tanasie, N.-L.; Zernia, S.; Stigler, J. Single-molecule imaging reveals a direct role of CTCF’s zinc fingers in SA interaction and cluster-dependent RNA recruitment. Nucleic Acids Research, 2024, 52(11), 6490-6506. doi: 10.1093/nar/gkae391
- Rapp, T.L.; DeForest, C.A. Tricolor visible wavelength-selective photodegradable hydrogel biomaterials. Nature Communications, 2023, 14, 5250. doi: 10.1038/s41467-023-40805-w
AF 594 NHS ester
- Kislova, A. V.; Zheglo, D.; Pozhitnova, V. O.; Sviridov, P. S.; Gadzhieva, E. P.; Voronina, E. S. Replication Stress Causes Delayed Mitotic Entry and Chromosome 12 Fragility at the ANKS1B Large Neuronal Gene in Human Induced Pluripotent Stem Cells. Chromosome Research, 2023, 31(3), 23. doi: 10.1007/s10577-023-09729-5
AF 647 azide
- Murali, V.S.; Rajendran, D.; Isogai, T.; DeBerardinis, R.J.; Danuser, G. RhoA activation promotes glucose uptake to elevate proliferation in MAPK inhibitor resistant melanoma cells. bioRxiv, 2024, preprint. doi: 10.1101/2024.01.09.574940
Alkyne CPG 1000A
- Petrunina, N.A.; Lebedev, V.V.; Kirillova, Y.G.; Aralov, A..V.; Varizhuk, A.M.; Sardushkin, M.V. DNA Intercalated Motifs with Non-Nucleoside Inserts. Russian Journal of Bioorganic Chemistry, 2021, 47(6), 1341–1344. doi: 10.1134/S1068162021060212
Alkyne CPG modifier 500
- Kolganova, N.A.; Tsvetkov, V.B.; Stomakhin, A.A.; Surzhikov, S.A.; Timofeev, E.N.; Varizhuk, I.V. Alpha-Deoxyguanosine to Reshape the Alpha-Thrombin Binding Aptamer. International Journal of Molecular Sciences, 2023, 24(9), 8406. doi: 10.3390/ijms24098406
- Petrunina, N.A.; Lebedev, V.V.; Kirillova, Y.G.; Aralov, A..V.; Varizhuk, A.M.; Sardushkin, M.V. DNA Intercalated Motifs with Non-Nucleoside Inserts. Russian Journal of Bioorganic Chemistry, 2021, 47(6), 1341–1344. doi: 10.1134/S1068162021060212
- Svetlova, J.; Sardushkin, M.; Kolganova, N.; Timofeev, E. Recognition Interface of the Thrombin Binding Aptamer Requires Antiparallel Topology of the Quadruplex Core. Biomolecules, 2021, 11(9), 1332. doi: 10.3390/biom11091332
Alkyne maleimide
- Hulce, K.R.; Jaishankar, P.; Lee, G.M.; Bohn, M.-F.; Connelly, E.J.; Wucherer, K.; Ongpipattanakul, C.; Volk, R.F.; Chuo, S.-W.; Arkin, M.R.; Renslo, A.R.; Craik, C.S. Inhibiting a dynamic viral protease by targeting a non-catalytic cysteine. Cell Chemical Biology, 2022, 29(5), 785-798.e19. doi: 10.1016/j.chembiol.2022.03.007
- Zanon, P.R.A.; Yu, F.; Musacchio, P.; Lewald, L.; Zollo, M.; Krauskopf, K.; Mrdović, D.; Raunft, P.; Maher, T.E.; Cigler, M.; Chang, C.; Lang, K.; Toste, F.D.; Nesvizhskii, A.I.; Hacker, S.M. Profiling the proteome-wide selectivity of diverse electrophiles. ChemRxiv, 2021, preprint. doi: 10.33774/chemrxiv-2021-w7rss-v2
Alkyne phosphoramidite, 5'-terminal
- Farzan, V.M.; Kvach, M.V.; Aparin, I.O.; Kireev, D.E.; Prikazchikova, T.A.; Ustinov, A.V.; Shmanai, V.V.; Shipulin, G.A.; Korshun, V.A.; Zatsepin, T.S. Novel homo Yin-Yang probes improve sensitivity in RT-qPCR detection of low copy HIV RNA. Talanta, 2019, 194, 226–232. doi: 10.1016/j.talanta.2018.10.043
- Taskova, M.; Uhd, J.; Miotke, L.; Kubit, M.; Bell, J.; Ji, H.P.; Astakhova, K. Tandem Oligonucleotide Probe Annealing and Elongation To Discriminate Viral Sequence. Analytical Chemistry, 2017, 89(8), 4363–4366. doi: 10.1021/acs.analchem.7b00646
- Aparin, I.O.; Farzan, V.M.; Veselova, O.A.; Chistov, A.A.; Podkolzin, A.T.; Ustinov, A.V.; Shipulin, G.A.; Formanovsky, A.A.; Korshun, V.A.; Zatsepin, T.S. 1-Phenylethynylpyrene (PEPy) as a novel blue-emitting dye for qPCR assay. Analyst, 2016, 141, 1331–1338. doi: 10.1039/c5an01767j
- Astakhova, I.K.; Santhosh Kumar, T.; Campbell, M.A.; Ustinov, A.V.; Korshun, V.A.; Wengel, J. Branched DNA nanostructures efficiently stabilised and monitored by novel pyrene-perylene 2'-alpha-L-amino-LNA FRET pairs. Chemical Communications, 2013, 49(5), 511-511. doi: 10.1039/c2cc37547h
Alkyne-PEG3-carboxylic acid
- Petrov, R.A.; Mefedova, S.R.; Yamansarov, E.Y.; Maklakova, S.Y.; Grishin, D.A.; Lopatukhina, E.V.; Burenina, O.Y.; Lopukhov, A.V.; Kovalev, S.V.; Timchenko, Y.V.; Ondar, E.E.; Ivanenkov, Y.A.; Evteev, S.A.; Vaneev, A.N.; Timoshenko, R.V.; Klyachko, N.L.; Erofeev, A.S.; Gorelkin, P.V.; Beloglazkina, E.K.; Majouga, A.G. New Small-Molecule Glycoconjugates of Docetaxel and GalNAc for Targeted Delivery to Hepatocellular Carcinoma. Molecular Pharmaceutics, 2021, 18(1), 461–468. doi: 10.1021/acs.molpharmaceut.0c00980
Amino-11-dUTP
- Kislova, A. V.; Zheglo, D.; Pozhitnova, V. O.; Sviridov, P. S.; Gadzhieva, E. P.; Voronina, E. S. Replication Stress Causes Delayed Mitotic Entry and Chromosome 12 Fragility at the ANKS1B Large Neuronal Gene in Human Induced Pluripotent Stem Cells. Chromosome Research, 2023, 31(3), 23. doi: 10.1007/s10577-023-09729-5
- Stinson, B.M.; Moreno, A.T.; Walter, J.C.; Loparo, J.J. A Mechanism to Minimize Errors during Non-homologous End Joining. Molecular Cell, 2020, 77(5), 1080–1091.e8. doi: 10.1016/j.molcel.2019.11.018
Amino-11-ddUTP
- Wu, J.; Xiao, Y.; Liu, Y.; Wen, L.; Jin, C.; Liu, S.; Paul, S.; He, C.; Regev, O.; Fei, J. Dynamics of RNA localization to nuclear speckles are connected to splicing efficiency. bioRxiv, 2024, preprint. doi: 10.1101/2024.02.29.581881
- Paul, S.; Arias, M.A.; Wen, L.; Liao, S.E.; Zhang, J.; Wang, X.; Regev, O.; Fei, J. RNA molecules display distinctive organization at nuclear speckles. iScience, 2024, 27(5), 109603. doi: 10.1016/j.isci.2024.109603
- Dave, P.; Roth, G.; Griesbach, E.; Mateju, D.; Hochstoeger, T.; Chao, J.A. Single-molecule imaging reveals translation-dependent destabilization of mRNAs. Molecular Cell, 2023, 83(4), 589-606.e6. doi: 10.1016/j.molcel.2023.01.013
- Arora, A.; Goering, R.; Velez, P.T.; Taliaferro, J.M. Visualization and quantification of subcellular RNA localization using single molecule RNA fluorescence in situ hybridization. Post-Transcriptional Gene Regulation. Methods in molecular biology, 2022, 2404, 247-266. doi: 10.1007/978-1-0716-1851-6_13
- Bose, M.; Lampe, M.; Mahamid, J.; Ephrussi, A. Liquid-to-Solid Phase Transition of Oskar Ribonucleoprotein Granules Is Essential for Their Function in Drosophila Embryonic Development. Cell, 2022, 185(8), 1308-1324.e23. doi: 10.1016/j.cell.2022.02.022
- van Leeuwen, W.; VanInsberghe, M.; Battich, N.; Salmén, F.; van Oudenaarden, A.; Rabouille, C. Identification of the stress granule transcriptome via RNA-editing in single cells and in vivo. Cell Reports Methods, 2022, 2(6), 100235. doi: 10.1016/j.crmeth.2022.100235
- Clark, H. R.; McKenney, C.; Livingston, N. M.; Gershman, A.; Sajjan, S.; Chan, I. S.; Ewald, A. J.; Timp, W.; Wu, B.; Singh, A.; Regot, S. Epigenetically Regulated Digital Signaling Defines Epithelial Innate Immunity at the Tissue Level. Nat Commun, 2021, 12(1), 1836. doi: 10.1038/s41467-021-22070-x
- Huang, S.-K.; Whitney, P.H.; Dutta, S.; Shvartsman, S.Y.; Rushlow, C.A. Spatial organization of transcribing loci during early genome activation in Drosophila. Current Biology, 2021, 31(22), 5102–5110. doi: 10.1016/j.cub.2021.09.027
- Wang, Y.; Cottle, W.T.; Wang, H.; Feng, X.A.; Mallon, J.; Gavrilov, M.; Bailey, S.; Ha, T. Genome oligopaint via local denaturation fluorescence in situ hybridization. Molecular Cell, 2021, 81(7), 1566–1577. doi: 10.1016/j.molcel.2021.02.011
- Goldman, D.H.; Livingston, N.M.; Movsik, J.; Wu, B.; Green, R. Live-cell imaging reveals kinetic determinants of quality control triggered by ribosome stalling. Molecular Cell, 2021, 81(8), 1830-1840.E8. doi: 10.1016/j.molcel.2021.01.029
- Bakker, R.; Mani, M.; Carthew, R. W. The Wg and Dpp Morphogens Regulate Gene Expression by Modulating the Frequency of Transcriptional Bursts. eLife, 2020, 9, e56076. doi: 10.7554/eLife.56076
- Boersma, S.; Rabouw, H.H.; Bruurs, L.J.M.; Pavlovič, T.; van Vliet, A.L.W.; Beumer, J.; Clevers, H.; van Kuppeveld, F.J.M.; Tanenbaum, M.E. Translation and Replication Dynamics of Single RNA Viruses. Cell, 2020, 183(7), 1930–1945.e23. doi: 10.1016/j.cell.2020.10.019
- Yu, Y.; Guo, Y.; Tian, Q.; Lan, Y.; Yeh, H.; Zhang, M.; Tasan, I.; Jain, S.; Zhao, H. An efficient gene knock-in strategy using 5'-modified double-stranded DNA donors with short homology arms. Nature Chemical Biology, 2020, 16(4), 387–390. doi: 10.1038/s41589-019-0432-1
- Hampoelz, B.; Schwarz, A.; Ronchi, P.; Bragulat-Teixidor, H.; Tischer, C.; Gaspar, I.; Ephrussi, A.; Schwab, Y.; Beck, M. Nuclear Pores Assemble from Nucleoporin Condensates During Oogenesis. Cell, 2019, 179, 671–686.e17. doi: 10.1016/j.cell.2019.09.022
- Wang, S. Single Molecule RNA FISH smFISH in Whole-Mount Mouse Embryonic Organs. Current Protocols in Cell Biology, 2019, 83(1), e79. doi: 10.1002/cpcb.79
- Gaspar, I.; Wippich, F.; Ephrussi, A. Enzymatic production of single molecule FISH and RNA capture probes. RNA, 2017, 23(10), 1582–1591. doi: 10.1261/rna.061184.117
Annexin V-AF 488 conjugate
- Fayzullina, D.; Yakushov, S.; Kantserova, K.; Belyaeva, E.; Aniskin, D.; Tsibulnikov, S.; Fayzullina, N.; Kalinin, S.; Romantsova, O.; Timashev, P.S.; Schroeder, B.A.; Ulasov, I.V. Carbonic Anhydrase Inhibitors Induce Ferroptosis through Inhibition of AKT/FTH1 Signaling in Ewing Sarcoma Tumor Cells. Cancers, 2023, 15(21), 5225. doi: 10.3390/cancers15215225
Ascorbic acid
- Baleva, M.V.; Piunova, U.; Chicherin, I.; Vasilev, R.; Levitskii, S.; Kamenski, P. Mitochondrial Protein SLIRP Affects Biosynthesis of Cytochrome c Oxidase Subunits in HEK293T Cells. International Journal of Molecular Sciences, 2024, 25(1), 93. doi: 10.3390/ijms25010093
- Kropacheva, N. O.; Golyshkin, A. A.; Vorobyeva, M. A.; Meschaninova, M. I. Convenient Solid-Phase Attachment of Small-Molecule Ligands to Oligonucleotides via a Biodegradable Acid-Labile P-N-Bond. Molecules, 2023, 28(4), 1904. doi: 10.3390/molecules28041904
- Girich, E.V.; Trinh, P.T.H; Nesterenko, L.E.; Popov, R.S.; Kim, N.Y.; Rasin, A.B.; Menchinskaya, E.S.; Kuzmich, A.S.; Chingizova, E.A.; Minin, A.S.; Ngoc, N.T.D.; Van, T.T.T.; Yurchenko, E.A.; Yurchenko, A.N.; Berdyshev, D.V. Absolute Stereochemistry and Cytotoxic Effects of Vismione E from Marine Sponge-Derived Fungus Aspergillus sp. 1901NT-1.2.2. International Journal of Molecular Sciences, 2023, 24(9), 8150. doi: 10.3390/ijms24098150
- Novopashina, D.S.; Vorobyeva, M.A.; Lomzov, A.A.; Silnikov, V.N.; Venyaminova, A.G. Terminal Mono- and Bis-Conjugates of Oligonucleotides with Closo-Dodecaborate: Synthesis and Physico-Chemical Properties. International Journal of Molecular Sciences, 2021, 22(1), 182. doi: 10.3390/ijms22010182
- Semikolenova, O.; Sakovina, L.; Akhmetova, E.; Kim, D.; Vokhtantsev, I.; Golyshev, V.; Vorobyeva, M.; Novopashin, S.; Novopashina, D. Photoactivatable nanoCRISPR/Cas9 System Based on crRNA Reversibly Immobilized on Carbon Nanoparticles. International Journal of Molecular Sciences, 2021, 22(20), 10919. doi: 10.3390/ijms222010919
- Jandl, B.; Sedghiniya, S.; Carstens, A.; Astakhova, K. Peptide–Fluorophore Hydrogel as a Signal Boosting Approach in Rapid Detection of Cancer DNA. ACS Omega, 2019, 4(9), 13889–13895. doi: 10.1021/acsomega.9b01586
- Meschaninova, M.I.; Novopashina, D.S.; Semikolenova, O.A.; Silnikov, V.N.; Venyaminova, A.G. Novel Convenient Approach to the Solid-Phase Synthesis of Oligonucleotide Conjugates. Molecules, 2019, 24(23), 4266. doi: 10.3390/molecules24234266
- Taskova, M.; Uhd, J.; Miotke, L.; Kubit, M.; Bell, J.; Ji, H.P.; Astakhova, K. Tandem Oligonucleotide Probe Annealing and Elongation To Discriminate Viral Sequence. Analytical Chemistry, 2017, 89(8), 4363–4366. doi: 10.1021/acs.analchem.7b00646
- Samuelsen, S.V.; Maity, A.; Nybo, M.; Macaubas, C.; Lønstrup, L.; Balboni, I.M.; Mellins, E.D.; Astakhova, K. Novel Phospholipid-Protein Conjugates Allow Improved Detection of Antibodies in Patients with Autoimmune Diseases. PLoS One, 2016, 11(6), e0156125. doi: 10.1371/journal.pone.0156125
- Li, Z.; Liu, Z.; Chen, Z.; Ju, E.; Li, W.; Ren, J.; Qu, X. Bioorthogonal chemistry for selective recognition, separation and killing bacteria over mammalian cells. Chemical Communications, 2016, 52(17), 3482–3485. doi: 10.1039/c5cc10625g
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Azide-PEG3-azide
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Azide-PEG4-amine
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Azidobutyric acid NHS ester
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BDP 558/568 NHS ester
- Liu, J.X.; Haataja, M.P.; Košmrlj, A.; Datta, S.S.; Arnold, C.B.; Priestley, R.D. Liquid–liquid phase separation within fibrillar networks. Nature Communications, 2023, 14, 6085. doi: 10.1038/s41467-023-41528-8
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BDP 558/568 alkyne
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BDP 558/568 amine
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BDP 558/568 carboxylic acid
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BDP 581/591 NHS ester
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BDP 630/650 alkyne
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BDP 630/650 amine
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BDP 630/650 carboxylic acid
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BDP 630/650 maleimide
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BDP 630/650-X-NHS ester
- Zhao, Z.; Li, C.; Zhang, Y.; Li, C.; Chu, Y.; Li, X.; Liu, P.; Chen, H.; Wang, Y.; Su, B.; Chen, Q.; Sun, T.; Jiang, C. Nanomaterials with Dual Immunomodulatory Functions for Synergistic Therapy of Breast Cancer Brain Metastases. Bioactive Materials, 2023, 27, 474–487. doi: 10.1016/j.bioactmat.2023.04.021
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BDP TMR NHS ester
- Nascimento, A.; Pedro, M.N.S.; Pinto, I.F.; Aires-Barros, M.R.; Azevedo, A.M. Microfluidics as a high-throughput solution for chromatographic process development – The complexity of multimodal chromatography used as a proof of concept. Journal of Chromatography A, 2021, 1658, 462618. doi: 10.1016/j.chroma.2021.462618
BDP TMR alkyne
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BDP TMR azide
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BDP TMR maleimide
- Gusev, I.D.; Firsov, A.M.; Chertkova, R.V.; Kotova, E.A.; Dolgikh, D.A.; Kirpichnikov, M.P.; Antonenko, Y.N. Study of Interaction of Fluorescent Cytochrome C with Liposomes, Mitochondria, and Mitoplasts by Fluorescence Correlation Spectroscopy. Russian Journal of Bioorganic Chemistry, 2020, 46(6), 1162–1171. doi: 10.1134/S1068162020060084
BDP TR NHS ester
- Best, Q.A.; Haack, R.A.; Swift, K.M.; Bax, B.M.; Tetin, S.Y.; Hershberger, S.J. A Rainbow of Acridinium Chemiluminescence. Luminescence, 2021, 36(4), 1097–1106. doi: 10.1002/bio.4038
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BDP® 493/503 lipid stain
- Balatskiy, A.; Ozhimalov, I.; Balatskaya, M.; Savina, A.; Filatova, J.; Kalinina, N.; Popov, V.; Tkachuk, V. Immature Vascular Smooth Muscle Cells in Healthy Murine Arteries and Atherosclerotic Plaques: Localization and Activity. International Journal of Molecular Sciences, 2022, 23(3), 1744. doi: 10.3390/ijms23031744
BDP® 650/665 alkyne
- Iacobazzi, R.M.; Arduino, I.; Di Fonte, R.; Lopedota, A.A.; Serratì, S.; Racaniello, G.; Bruno, V.; Laquintana, V.; Lee, B.-C.; Silvestris, N.; Leonetti, F.; Denora, N.; Porcelli, L.; Azzariti, A. Microfluidic-Assisted Preparation of Targeted pH-Responsive Polymeric Micelles Improves Gemcitabine Effectiveness in PDAC: In Vitro Insights. Cancers, 2022, 14(1), 5. doi: 10.3390/cancers14010005
BDP® 650/665 maleimide
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BDP® 650/665-X-NHS ester
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- Daumar, P.; Goisnard, A.; Dubois, C.; Roux, M.; Depresle, M.; Penault-Llorca, F.; Bamdad, M.; Mounetou, E. Chemical biology fluorescent tools for in vitro investigation of the multidrug resistant P-glycoprotein (P-gp) expression in tumor cells. RSC Advances, 2023, 13(39), 27016-27035. doi: 10.1039/d3ra05093a
BDP® FL DBCO
- Merlo, R.; Caprioglio, D.; Cillo, M.; Valenti, A.; Mattossovich, R.; Morrone, C.; Massarotti, A.; Rossi, F.; Miggiano, R.; Leonardi, A.; Minassi, A.; Perugino, G. The SNAP-tag technology revised: an effective chemo-enzymatic approach by using a universal azide-based substrate. Journal of Enzyme Inhibition and Medicinal Chemistry, 2021, 36(1), 85–97. doi: 10.1080/14756366.2020.1841182
- Islam, M.R.; Nguy, C.; Pandit, S.; Lyon, L.A. Design and Synthesis of Core–Shell Microgels with One‐Step Clickable Crosslinked Cores and Ultralow Crosslinked Shells. Macromolecular Chemistry and Physics, 2020, 221(19), 2000156. doi: 10.1002/macp.202000156
BDP® FL NHS ester
- Tereshchenkov, A. G.; Khairullina, Z. Z.; Volynkina, I. A.; Lukianov, D. A.; Nazarov, P. A.; Pavlova, J. A.; Tashlitsky, V. N.; Razumova, E. A.; Ipatova, D. A.; Timchenko, Y. V.; Senko, D. A.; Efremenkova, O. V.; Paleskava, A.; Konevega, A. L.; Osterman, I. A.; Rodin, I. A.; Sergiev, P. V.; Dontsova, O. A.; Bogdanov, A. A.; Sumbatyan, N. V. Triphenylphosphonium Analogs of Short Peptide Related to Bactenecin 7 and Oncocin 112 as Antimicrobial Agents. Pharmaceutics, 2024, 16(1), 148. doi: 10.3390/pharmaceutics16010148
- Kicková, E.; Sadeghi, A.; Puranen, J.; Tavakoli, S.; Sen, M.; Ranta, V.-P.; Arango-Gonzalez, B.; Bolz, S.; Ueffing, M.; Salmaso, S.; Caliceti, P.; Toropainen, E.; Ruponen, M.; Urtti, A. Pharmacokinetics of Pullulan–Dexamethasone Conjugates in Retinal Drug Delivery. Pharmaceutics, 2023, 14(1), 12. doi: 10.3390/pharmaceutics14010012
- Ji, F.; Hur, M.; Hur, S.; Wang, S.; Sarkar, P.; Shao, S.; Aispuro, D.; Cong, X.; Hu, Y.; Li, Z.; Xue, M. Multiplex Protein Imaging through PACIFIC: Photoactive Immunofluorescence with Iterative Cleavage. ACS Bio Med Chem Au, 2023, 3(3), 283–294. doi: 10.1021/acsbiomedchemau.3c00018
- Daumar, P.; Goisnard, A.; Dubois, C.; Roux, M.; Depresle, M.; Penault-Llorca, F.; Bamdad, M.; Mounetou, E. Chemical biology fluorescent tools for in vitro investigation of the multidrug resistant P-glycoprotein (P-gp) expression in tumor cells. RSC Advances, 2023, 13(39), 27016-27035. doi: 10.1039/d3ra05093a
- Meyer, S.; Blaas, I.; Bollineni, R.C.; Delic-Sarac, M.; Tran, T.T.; Knetter, C.; Dai, K.-Z.; Madssen, T.S.; Vaage, J.T.; Gustavsen, A.; Yang, W.; Nissen-Meyer, L.S.H.; Douvlataniotis, K.; Laos, M.; Nielsen, M.M.; Thiede, B.; Søraas, A.; Lund-Johansen, F.; Rustad, E.H.; Olweus, J. Prevalent and immunodominant CD8 T cell epitopes are conserved in SARS-CoV-2 variants. Cell Reports, 2023, 42(1), 111995. doi: 10.1016/j.celrep.2023.111995
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- Santos-Coquillat, A.; González, M. I.; Clemente-Moragón, A.; González-Arjona, M.; Albaladejo-García, V.; Peinado, H.; Muñoz, J.; Ximénez Embún, P.; Ibañez, B.; Oliver, E.; Desco, M.; Salinas, B. Goat Milk Exosomes As Natural Nanoparticles for Detecting Inflammatory Processes By Optical Imaging. Small, 2022, 18(6), 2105421. doi: 10.1002/smll.202105421
- Morris, M.A.; Jones, C.R.; Nowick, J.S. Synthesis and Application of Fluorescent Teixobactin Analogues. Methods in enzymology, 2022, 665, 233-258. doi: 10.1016/bs.mie.2021.12.006
- Bakaeva, Z.; Lizunova, N.; Tarzhanov, I.; Boyarkin, D.; Petrichuk, S.; Pinelis, V.; Fisenko, A.; Tuzikov, A.; Sharipov, R.; Surin, A. Lipopolysaccharide From E. coli Increases Glutamate-Induced Disturbances of Calcium Homeostasis, the Functional State of Mitochondria, and the Death of Cultured Cortical Neurons. Frontiers in Molecular Neuroscience, 2022, 14, 811171. doi: 10.3389/fnmol.2021.811171
- Medley, B.J.; Leclaire, L.; Thompson, N.; Mahoney, K.E.; Pluvinage, B.; Parson, M.A.H.; Burke, J.E.; Malaker, S.; Wakarchuk, W.; Boraston, A.B. A previously uncharacterized O -glycopeptidase from Akkermansia muciniphila requires the Tn-antigen for cleavage of the peptide bond. The Journal of Biological Chemistry, 2022, 298(10), 102439. doi: 10.1016/j.jbc.2022.102439
- Lee, A.; Sousa de Almeida, M.; Milinkovic, D.; Septiadi, D.; Taladriz-Blanco, P.; Loussert-Fonta, C.; Balog, S.; Bazzoni, A.; Rothen-Rutishauser, B.; Petri-Fink, A. Substrate stiffness reduces particle uptake by epithelial cells and macrophages in a size-dependent manner through mechanoregulation. Nanoscale, 2022, 14(40), 15141-15155. doi: 10.1039/d2nr03792k
- Nascimento, A.; Pedro, M.N.S.; Pinto, I.F.; Aires-Barros, M.R.; Azevedo, A.M. Microfluidics as a high-throughput solution for chromatographic process development – The complexity of multimodal chromatography used as a proof of concept. Journal of Chromatography A, 2021, 1658, 462618. doi: 10.1016/j.chroma.2021.462618
- Best, Q.A.; Haack, R.A.; Swift, K.M.; Bax, B.M.; Tetin, S.Y.; Hershberger, S.J. A Rainbow of Acridinium Chemiluminescence. Luminescence, 2021, 36(4), 1097–1106. doi: 10.1002/bio.4038
- González, M.I.; González-Arjona, M.; Santos-Coquillat, A.; Vaquero, J.; Vázquez-Ogando, E.; de Molina, A.; Peinado, H.; Desco, M.; Salinas, B. Covalently Labeled Fluorescent Exosomes for In Vitro and In Vivo Applications. Biomedicines, 2021, 9, 81. doi: 10.3390/biomedicines9010081
- Yao, J.; Huang, X.; Ren, J. In Situ Determination of Secretory Kinase Fam20C from Living Cells Using Fluorescence Correlation Spectroscopy. Talanta, 2021, 232, 122473. doi: 10.1016/j.talanta.2021.122473
- Mathew, B.; Aoyagi, K.L.; Fisher, M.A. Yersinia pestis lipopolysaccharide remodeling confers resistance to a Xenopsylla cheopis cecropin. ACS Infectious Diseases, 2021, 7(8), 2536-2545. doi: 10.1021/acsinfecdis.1c00275
- Sapozhnikova, K.A.; Misyurin, V.A.; Ryazantsev, D.Y.; Kokin, E.A.; Finashutina, Y.P.; Alexeeva, A.V.; Ivanov, I.A.; Kocharovskaya, M.V.; Tikhonova, N.A.; Popova, G.P.; Alferova, V.A.; Ustinov, A.V.; Korshun, V.A.; Brylev, V.A. Sensitive Immunofluorescent Detection of the PRAME Antigen Using a Practical Antibody Conjugation Approach. International Journal of Molecular Sciences, 2021, 22(23), 12845. doi: 10.3390/ijms222312845
- Volz, J.; Kusch, C.; Beck, S.; Popp, M.; Vögtle, T.; Meub, M.; Scheller, I.; Heil, H.S.; Preu, J.; Schuhmann, M.K.; Hemmen, K.; Premsler, T.; Sickmann, A.; Heinze, K.G.; Stegner, D.; Stoll, G.; Braun, A.; Sauer, M.; Nieswandt, B. BIN2 orchestrates platelet calcium signaling in thrombosis and thrombo-inflammation. Journal of Clinical Investigation, 2020, 130(11), 6064–6079. doi: 10.1172/JCI136457
- Susnik, E.; Taladriz-Blanco, P.; Drasler, B.; Balog, S.; Petri-Fink, A.; Rothen-Rutishauser, B. Increased Uptake of Silica Nanoparticles in Inflamed Macrophages but Not upon Co-Exposure to Micron-Sized Particles. Cells, 2020, 9(9), 2099. doi: 10.3390/cells9092099
- FitzGerald, L.I.; Aurelio, L.; Chen, M.; Yuen, D.; Rennick, J.J.; Graham, B.; Johnston, A.P.R. A molecular sensor to quantify the localization of proteins, DNA and nanoparticles in cells. Nature Communications, 2020, 11(1), 4482. doi: 10.1038/s41467-020-18082-8
- Pereira de Sousa, I.; Gourmel, C.; Berkovska, O.; Burger, M.; Leroux, J.-C. A microparticulate based formulation to protect therapeutic enzymes from proteolytic digestion: phenylalanine ammonia lyase as case study. Scientific Reports, 2020, 10, 3651. doi: 10.1038/s41598-020-60463-y
- Viegas, A.; Dollinger, P.; Verma, N.; Kubiak, J.; Viennet, T.; Seidel, C.A.M.; Gohlke, H.; Etzkorn, M.; Kovacic, F.; Jaeger, K.-E. Structural and dynamic insights revealing how lipase binding domain MD1 of Pseudomonas aeruginosa foldase affects lipase activation. Scientific Reports, 2020, 10, 3578. doi: 10.1038/s41598-020-60093-4
- Korevaar, P.A.; Kaplan, C.N.; Grinthal, A.; Rust, R.M.; Aizenberg, J. Non-equilibrium signal integration in hydrogels. Nature Communications, 2020, 11, 386. doi: 10.1038/s41467-019-14114-0
- Martin, C.; Brachet, G.; Colas, C.; Allard-Vannier, E.; Kizlik-Masson, C.; Esnault, C.; Respaud, R.; Denevault-Sabourin, C.; Chourpa, I.; Gouilleux-Gruart, V.; Viaud-Massuard, M.-C.; Joubert, N. In Vitro Characterization and Stability Profiles of Antibody-Fluorophore Conjugates Derived from Interchain Cysteine Cross-Linking or Lysine Bioconjugation. Pharmaceuticals, 2019, 12(4), 176. doi: 10.3390/ph12040176
- Simpson, J.D.; Ediriweera, G.R.; Howard, C.B.; Fletcher, N.L.; Bell, C.A.; Thurecht, K.J. Polymer design and component selection contribute to uptake, distribution & trafficking behaviours of polyethylene glycol hyperbranched polymers in live MDA-MB-468 breast cancer cells. Biomaterials Science, 2019, 7(11), 4661–4674. doi: 10.1039/c9bm00957d
- Lee, S.A.; Biteen, J.S. Spectral Reshaping of Single Dye Molecules Coupled to Single Plasmonic Nanoparticles. Journal of Physical Chemistry Letters, 2019, 10, 5764–5769. doi: 10.1021/acs.jpclett.9b02480
- São Pedro, M.N.; Azevedo, A.M.; Aires-Barros, M.R.; Soares, R.R.G. Minimizing the influence of fluorescent tags on IgG partition in PEG-salt aqueous two-phase systems for rapid screening applications. Biotechnology Journal, 2019, 14(8), 1800640. doi: 10.1002/biot.201800640
- Burla, F.; Tauber, J.; Dussi, S.; van der Gucht, J.; Koenderink, G.H. Stress management in composite biopolymer networks. Nature Physics, 2019, 15(6), 549–553. doi: 10.1038/s41567-019-0443-6
- Qi, T.; Chen, B.; Wang, Z.; Du, H.; Liu, D.; Yin, Q.; Liu, B.; Zhang, Q.; Wang, Y. A pH-Activatable nanoparticle for dual-stage precisely mitochondria-targeted photodynamic anticancer therapy. Biomaterials, 2019, 213, 119219. doi: 10.1016/j.biomaterials.2019.05.030
- Steinmetz, H.P.; Rudnick-Glick, S.; Natan, M.; Banin, E.; Margel, S. Poly(styryl bisphosphonate) nanoparticles with a narrow size distribution: Synthesis, characterization and antibacterial applications. European Polymer Journal, 2019, 116, 65–73. doi: 10.1016/j.eurpolymj.2019.04.007
- Reichart, F.; Maltsev, O.V.; Kapp, T.G.; Räder, A.F.B.; Weinmüller, M.; Marelli, U.K.; Notni, J.; Wurzer, A.; Beck, R.; Wester, H.-J.; Steiger, K.; Di Maro, S.; Di Leva, F.S.; Marinelli, L.; Nieberler, M.; Reuning, U.; Schwaiger, M.; Kessler, H. Selective Targeting of Integrin αvβ8 by a Highly Active Cyclic Peptide. Journal of Medicinal Chemistry, 2019, 62(4), 2024–2037. doi: 10.1021/acs.jmedchem.8b01588
- Bond, M.J.; Bleiler, M.; Harrison, L.E.; Scocchera, E.W.; Nakanishi, M.; G-Dayanandan, N.; Keshipeddy, S.; Rosenberg, D.W.; Wright, D.L.; Giardina, C. Spindle assembly disruption and cancer cell apoptosis with a CLTC-binding compound. Molecular Cancer Research, 2018, 16(9), 1361–1372. doi: 10.1158/1541-7786.MCR-18-0178
- Alferova, V.A.; Shuvalov, M.V.; Suchkova, T.A.; Proskurin, G.V.; Aparin, I.O.; Rogozhin, E.A.; Novikov, R.A.; Solyev, P.N.; Chistov, A.A.; Ustinov, A.V.; Tyurin, A.P.; Korshun, V.A. 4-Chloro-L-kynurenine as fluorescent amino acid in natural peptides. Amino Acids, 2018, 50(12), 1697–1705. doi: 10.1007/s00726-018-2642-3
- Poreba, M.; Rut, W.; Vizovisek, M.; Groborz, K.; Kasperkiewicz, P.; Finlay, D.; Vuori, K.; Turk, D.; Turk, B.; Salvesen, G.; Drag, M. Selective imaging of human cathepsin L in breast cancer by fluorescent activity-based probes. Chemical Science, 2018, 9(8), 2113–2129. doi: 10.1039/C7SC04303A
- Grube, L.; Dellen, R.; Kruse, F.; Schwender, H.; Stuehler, K.; Poschmann, G. Mining the secretome of C2C12 muscle cells: Data dependent experimental approach to analyze protein secretion using label-free quantification and peptide based analysis. Journal of Proteome Research, 2018, 17(2), 879–890. doi: 10.1021/acs.jproteome.7b00684
- Wang, C.; Niederstrasser, H.; Douglas, P.M.; Lin, R.; Jaramillo, J.; Li, Y.; Olswald, N.W.; Zhou, A.; McMillan, E.A.; Mendiratta, S.; Wang, Z.; Zhao, T.; Lin, Z.; Luo, M.; Huang, G.; Brekken, R.A.; Posner, B.A.; MacMillan, J.B.; Gao, J.; White, M.A. Small-molecule TFEB pathway agonists that ameliorate metabolic syndrome in mice and extend C. elegans lifespan. Nature Communications, 2017, 8, 2270. doi: 10.1038/s41467-017-02332-3
- Gaspar, I.; Wippich, F.; Ephrussi, A. Enzymatic production of single molecule FISH and RNA capture probes. RNA, 2017, 23(10), 1582–1591. doi: 10.1261/rna.061184.117
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- Löschmann, N.; Michaelis, M.; Rothweiler, F.; Voges, Y.; Balónová, B.; Blight, B.A.; Cinatl, J. ABCB1 as predominant resistance mechanism in cells with acquired SNS-032 resistance. Oncotarget, 2016, 7(36), 58051–58064. doi: 10.18632/oncotarget.11160
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BDP® FL alkyne
- Fong, C.K.; Andersen, M.J.; Kunesh, E.; Leonard, E.; Durand, D.; Coombs, R.; Flores-Mireles, A.L.; Howell, C. Removal of Free Liquid Layer from Liquid-Infused Catheters Reduces Silicone Loss into the Environment while Maintaining Adhesion Resistance. medRxiv, 2023, preprint. doi: 10.1101/2023.09.14.23295548
- Charoen-Rajapark, P.; Clarke, D.R. Confocal microscopy observations of electrical pre-breakdown of bi-layer elastomer dielectrics. Extreme Mechanics Letters, 2021, 49, 101473. doi: 10.1016/j.eml.2021.101473
- Abukar, T.; Rahmani, S.; Thompson, N.K.; Antonescu, C.N.; Wakarchuk, W.W. Development of BODIPY labelled sialic acids as sialyltransferase substrates for direct detection of terminal galactose on N- and O-linked glycans. Carbohydrate Research, 2021, 500, 108249. doi: 10.1016/j.carres.2021.108249
- Merlo, R.; Caprioglio, D.; Cillo, M.; Valenti, A.; Mattossovich, R.; Morrone, C.; Massarotti, A.; Rossi, F.; Miggiano, R.; Leonardi, A.; Minassi, A.; Perugino, G. The SNAP-tag technology revised: an effective chemo-enzymatic approach by using a universal azide-based substrate. Journal of Enzyme Inhibition and Medicinal Chemistry, 2021, 36(1), 85–97. doi: 10.1080/14756366.2020.1841182
- Du, T.; Buenbrazo, N.; Kell, L.; Rahmani, S.; Sim, L.; Withers, S.G.; DeFrees, S.; Wakarchuk, W.;. A Bacterial Expression Platform for Production of Therapeutic Proteins Containing Human-like O-Linked Glycans. Cell Chemical Biology, 2019, 26(2), 203–212.e5. doi: 10.1016/j.chembiol.2018.10.017
- Daryaee, F.; Zhang, Z.; Gogarty, K.R.; Li, Y.; Merino, J.; Fisher, S.L.; Tonge, P.J. A quantitative mechanistic PK/PD model directly connects Btk target engagement and in vivo efficacy. Chemical Science, 2017, 8(5), 3434–3443. doi: 10.1039/c6sc03306g
- Kubota, T.; Durek, T.; Dang, B.; Finol-Urdaneta, R.K.; Craik, D.J.; Kent, S.B.H.; French, R.J.; Bezanilla, F.; Correa, A.M. Mapping of voltage sensor positions in resting and inactivated mammalian sodium channels by LRET. Proceedings of the National Academy of Sciences of the U.S.A., 2017, 114(10), E1857–1865. doi: 10.1073/pnas.1700453114
BDP® FL amine
- Tuzikov, A.; Shilova, N.; Ovchinnikova, T.; Nokel, A.; Patova, O.; Knirel, Y.; Chernova, T.; Gorshkova, T.; Bovin, N. Labeling of Polysaccharides with Biotin and Fluorescent Dyes. Polysaccharides, 2023, 5(1), 1-15. doi: 10.3390/polysaccharides5010001
- Rapoport, E. M.; Khasbiullina, N. R.; Komarova, V. A.; Ryzhov, I. M.; Gorbatch, M. M.; Tuzikov, A. B.; Khaidukov, S. V.; Popova, I. S.; Korchagina, E. Y.; Henry, S. M.; Bovin, N. V. Localization of Synthetic Glycolipids in the Cell and the Dynamics of Their Insertion/Loss. Biochimica et Biophysica Acta (BBA) - Biomembranes, 2021, 1863(9), м. doi: 10.1016/j.bbamem.2021.183645
- Zhu, M.; Lu, D.; Wu, S.; Lian, Q.; Wang, W.; Lyon, A.; Wang, W.; Bartolo, P.; Saunders, B.R. Using green emitting pH-responsive nanogels to report environmental changes within hydrogels: A nanoprobe for versatile sensing. Nanoscale, 2019, 11(24), 11484–11495. doi: 10.1039/c9nr00989b
BDP® FL azide
- Bieber, J. M.; Sanman, L. E.; Sun, X.; Hammerlindl, H.; Bao, F.; Roth, M. A.; Koleske, M. L.; Huang, L.; Aweeka, F.; Wu, L. F.; Altschuler, S. J. Differential Toxicity to Murine Small and Large Intestinal Epithelium Induced by Oncology Drugs. Commun Biol, 2022, 5(1), 1–11. doi: 10.1038/s42003-022-03048-x
- Salazar-Chaparro, A. F.; Halder, S.; Trader, D. J. Synthesis and Application of a Clickable Epoxomicin-Based Probe for Proteasome Activity Analysis. Current Protocols, 2022, 2(7), e490. doi: 10.1002/cpz1.490
- Grossenbacher, P.; C. Essers, M.; Moser, J.; A. Singer, S.; Häusler, S.; Stieger, B.; Rougier, J.-S.; Lochner, M. Bioorthogonal Site-Selective Conjugation of Fluorescent Dyes to Antibodies: Method and Potential Applications. RSC Advances, 2022, 12(44), 28306–28317. doi: 10.1039/D2RA05580E
- Koch, P.D.; Quintana, J.; Ahmed, M.S.; Kohler, R.H.; Weissleder, R. Small Molecule Imaging Agent for Mutant KRAS G12C. Advanced Therapeutics, 2021, 4(5), 2000290. doi: 10.1002/adtp.202000290
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- Sanman, L.E.; Chen, I.W.; Bieber, J.M.; Steri, V.; Trentesaux, C.; Hann, B.; Klein, O.D.; Wu, L.F.; Altschuler, S.J. Transit-amplifying cells coordinate changes in intestinal epithelial cell type composition. Developmental Cell, 2021, 56(3), 356-365.e9. doi: 10.1016/j.devcel.2020.12.020
- Rodríguez-Hakim, M.; Anand, S.; Tajuelo, J.; Yao, Z.; Kannan, A.; Fuller, G.G. Asphaltene-induced spontaneous emulsification: Effects of interfacial co-adsorption and viscoelasticity. Journal of Rheology, 2020, 64(4), 799–816. doi: 10.1122/1.5145307
- Antonov, S.A.; Novosadova, E.V.; Kobylansky, A.G.; Tarantul, V.Z.; Grivennikov, I.A. A Hybrid Detection Method Based on Peroxidase-mediated Signal Amplification and Click Chemistry for Highly Sensitive Background-free Immunofluorescent Staining. Journal of Histochemistry & Cytochemistry, 2019, 67(10), 771–782. doi: 10.1369/0022155419864113
- Nuhn, L.; Boli, E.; Massa, S.; Vandenberghe, I.; Movahedi, K.; Devreese, B.; Van Ginderachter, J.; De Geest, B.G. Targeting protumoral tumor-associated macrophages with nanobody-functionalized nanogels through SPAAC ligation. Bioconjugate Chemistry, 2018, 29(7), 2394–2405. doi: 10.1021/acs.bioconjchem.8b00319
BDP® FL carboxylic acid
- Tong, Z.; Xie, Y.; Arno, M. C.; Zhang, Y.; Manners, I.; O’Reilly, R. K.; Dove, A. P. Uniform Segmented Platelet Micelles with Compositionally Distinct and Selectively Degradable Cores. Nature Chemistry, 2023, 15(6), 824–831. doi: 10.1038/s41557-023-01177-2
- Oerlemans, R.A.J.F.; Shao, J.; van Stevendaal, M.H.M.E.; Wu, H.; Patiño Padial, T.; Abdelmohsen, L.K.E.A.; van Hest, J.C.M. Biodegradable Grubbs-Loaded Artificial Organelles for Endosomal Ring-Closing Metathesis. Biomacromolecules, 2023, 24(9), 4148-4155. doi: 10.1021/acs.biomac.3c00487
- Blokhin, V.; Lavrova, A.V.; Surkov, S.A.; Mingazov, E.R.; Gretskaya, N.M.; Bezuglov, V.V.; Ugrumov, M.V. A New Method for the Visualization of Living Dopaminergic Neurons and Prospects for Using It to Develop Targeted Drug Delivery to These Cells. International Journal of Molecular Sciences, 2022, 23(7), 3678. doi: 10.3390/ijms23073678
- van Beek, L.F.; Welzen, P.L.W.; Teufel, L.U.; Joosten, I.; Diavatopoulos, D.A.; van Hest, J.; de Jonge, M.I. Bimodal Targeting of Human Leukocytes by Fc- and CpG-Decorated Polymersomes to Tune Immune Induction. Biomacromolecules, 2021, 22(10), 4422–4433. doi: 10.1021/acs.biomac.1c00985
- Ridolfo, R.; Tavakoli, S.; Junnuthula, V.; Williams, D.S.; Urtti, A.; van Hest, J.C.M. Exploring the impact of morphology on the properties of biodegradable nanoparticles and their diffusion in complex biological medium. Biomacromolecules, 2021, 22(1), 126–133. doi: 10.1021/acs.biomac.0c00726
- Junnuthula, V.; Sadeghi Boroujeni, A.; Cao, S.; Tavakoli, S.; Ridolfo, R.; Toropainen, E.; Ruponen, M.; van Hest, J. C. M.; Urtti, A. Intravitreal Polymeric Nanocarriers with Long Ocular Retention and Targeted Delivery to the Retina and Optic Nerve Head Region. Pharmaceutics, 2021, 13(4), 445. doi: 10.3390/pharmaceutics13040445.
- Junnuthula, V.; Sadeghi Boroujeni, A.; Cao, S.; Tavakoli, S.; Ridolfo, R.; Toropainen, E.; Ruponen, M.; van Hest, J.C.M.; Urtti, A. Intravitreal Polymeric Nanocarriers with Long Ocular Retention and Targeted Delivery to the Retina and Optic Nerve Head Region. Pharmaceutics, 2021, 13(4), 445. doi: 10.3390/pharmaceutics13040445
- Ridolfo, R.; Arends, J.J.; van Hest, J.C.M.; Williams, D.S. Worm-like nanovector with enhanced drug loading using blends of biodegradable block copolymers. Biomacromolecules, 2020, 21(6), 2199–2207. doi: 10.1021/acs.biomac.0c00169
- Möltgen, S.; Piumatti, E.; Massafra, G.M.; Metzger, S.; Jaehde, U.; Kalayda, G.V. Cisplatin Protein Binding Partners and Their Relevance for Platinum Drug Sensitivity. Cells, 2020, 9, 1322. doi: 10.3390/cells9061322
- Ferrer-González, E.; Fujita, J.; Yoshizawa, T.; Nelson, J.M.; Pilch, A.J.; Hillman, E.; Ozawa, M.; Kuroda, N.; Al-Tameemi, H.M.; Boyd, J.M.; LaVoie, E.J.; Matsumura, H.; Pilch, Daniel S. Structure-Guided Design of a Fluorescent Probe for the Visualization of FtsZ in Clinically Important Gram-Positive and Gram-Negative Bacterial Pathogens. Scientific Reports, 2019, 9, 20092. doi: 10.1038/s41598-019-56557-x
BDP® FL hydrazide
- Nojima, S.; Ishida, S.; Terayama, K.; Matsumoto, K.; Matsui, T.; Tahara, S.; Ohshima, K.; Kiyokawa, H.; Kido, K.; Ukon, K.; Yoshida, S.Y.; Mitani, T.T.; Doki, Y.; Mizushima, T.; Okuno, Y.; Susaki, E.A.; Ueda, H.R.; Morii, E. A Novel Three-Dimensional Imaging System Based on Polysaccharide Staining for Accurate Histopathological Diagnosis of Inflammatory Bowel Diseases. Cellular and Molecular Gastroenterology and Hepatology, 2022, 14(4), 905-924. doi: 10.1016/j.jcmgh.2022.07.001
- Roloff, A.; Nirmalananthan-Budau, N.; Rühle, B.; Borcherding, H.; Thiele, T.; Schedler, U.; Resch-Genger, U. Quantification of Aldehydes on Polymeric Microbead Surfaces via Catch and Release of Reporter Chromophores. Analytical Chemistry, 2019, 91(14), 8827–8834. doi: 10.1021/acs.analchem.8b05515
- Liu, R.; Vairaprakash, P.; Lindsey, J.S. Self-assembly with fluorescence readout in a free base dipyrrin–polymer triggered by metal ion binding in aqueous solution. New Journal of Chemistry, 2019, 43(24), 9711–9724. doi: 10.1039/c9nj01787a
BDP® FL maleimide
- Chandler, T.; Guo, M.; Su, Y.; Chen, J.; Wu, Y.; Liu, J.; Agashe, A.; Fischer, R.S.; Mehta, S.B.; Kumar, A.; Baskin, T.I.; Jamouillé, V.; Liu, H.; Swaminathan, V.; Nain, A.; Oldenbourg, R.; Riviére, P.L.; Shroff, H. Three-dimensional spatio-angular fluorescence microscopy with a polarized dual-view inverted selective-plane illumination microscope (pol-diSPIM). bioRxiv, 2024, preprint. doi: 10.1101/2024.03.09.584243
- Gileva, A.; Trushina, D.; Yagolovich, A.; Gasparian, M.; Kurbanova, L.; Smirnov, I.; Burov, S.; Markvicheva, E. Doxorubicin-Loaded Polyelectrolyte Multilayer Capsules Modified with Antitumor DR5-Specific TRAIL Variant for Targeted Drug Delivery to Tumor Cells. Nanomaterials, 2023, 13(5), 902. doi: 10.3390/nano13050902
- Marotta, N. P.; Ara, J.; Uemura, N.; Lougee, M. G.; Meymand, E. S.; Zhang, B.; Petersson, E. J.; Trojanowski, J. Q.; Lee, V. M.-Y. Alpha-Synuclein from Patient Lewy Bodies Exhibits Distinct Pathological Activity That Can Be Propagated in Vitro. Acta Neuropathologica Communications, 2021, 9(1), 188. doi: 10.1186/s40478-021-01288-2
- Koch, S.; Seinen, A.-B.; Kamel, M.; Kuckla, D.; Monzel, C.; Kedrov, A.; Driessen, A.J.M. Single-molecule analysis of dynamics and interactions: of the SecYEG translocon. FEBS Journal, 2021, 288(7), 2203–2221. doi: 10.1111/febs.15596
- São Pedro, M.N.; Azevedo, A.M.; Aires-Barros, M.R.; Soares, R.R.G. Minimizing the influence of fluorescent tags on IgG partition in PEG-salt aqueous two-phase systems for rapid screening applications. Biotechnology Journal, 2019, 14(8), 1800640. doi: 10.1002/biot.201800640
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Cyanine7.5 NHS ester
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Cyanine7.5 alkyne
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Cyanine7.5 amine
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FAM amine, 5-isomer
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FAM azide, 5-isomer
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ProteOrange Protein Gel Stain, 5000×
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ProteOrange Protein Quantification Reagent, 500×
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Pyrene azide 1
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Pyrene azide 2
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Pyrene maleimide
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Pyrenebutyric acid NHS ester
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R110 azide, 6-isomer
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R6G alkyne, 6-isomer
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ROX NHS ester, 5-isomer
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ROX NHS ester, 6-isomer
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ROX azide, 5-isomer
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ROX azide, 6-isomer
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ROX maleimide, 5-isomer
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ROX reference dye for qPCR
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TAMRA CPG 500, 5-isomer
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TAMRA NHS ester, 5-isomer
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TAMRA NHS ester, 6-isomer
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TAMRA alkyne, 5-isomer
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- Rojas-Sánchez, L.; Sokolova, V.; Riebe, S.; Voskuhl, J.; Epple, M. Covalent Surface Functionalization of Calcium Phosphate Nanoparticles with Fluorescent Dyes by Copper-Catalysed and by Strain-Promoted Azide-Alkyne Click Chemistry. ChemNanoMat, 2019, 5(4), 436–446. doi: 10.1002/cnma.201800509
TAMRA alkyne, 6-isomer
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TAMRA amine, 5-isomer
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TAMRA azide, 5-isomer
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TAMRA azide, 6-isomer
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TAMRA hydrazide, 6-isomer
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TAMRA maleimide, 6-isomer
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TFA-amino modifier CPG 500
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THPTA ligand
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sulfo-Cyanine3 maleimide
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sulfo-Cyanine5 tetrazine
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sulfo-Cyanine5.5 NHS ester
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