Lumiprobe citation list

Here is a list of research publications citing use of Lumiprobe products, sortable by date or cited product.

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In press

  1. Cooley, M.B.; Abenojar, E.C.; Wegierak, D.; Gupta, A.S.; Kolios, M.C.; Exner, A.A. Characterization of the Interaction of Nanobubble Ultrasound Contrast Agents with Human Blood Components. bioRxiv, preprint. doi: 10.1101/2022.02.11.480110
  2. Zahid, M.; McCandless, K.; Mishra, S.; Stiltner, J.; Feldman, K.; Yagi, H.; Yurko, R.; Islam, K.; Brown, J.; Frizzell, R. Novel Lung Targeting Cell Penetrating Peptides as Vectors for Delivery of Therapeutics. Research Square, preprint. doi: 10.21203/rs.3.rs-1056707/v1
  3. Grohme, M.; Frank, O.; Rink, J. Preparing Planarian Cells for High-content Fluorescence Microscopy Using RNA in situ Hybridization and Immunocytochemistry. preprints.org, preprint. doi: 10.20944/preprints202111.0256.v1
  4. Futamata, H.; Fukuda, M.; Umeda, R.; Yamashita, K.; Takahashi, S.; Shikakura, Ta.; Hayashi, S.; Homma, K.; Nishizawa, T.; Nureki, O. Cryo-EM structures reveal the electromotility mechanism of prestin, the cochlear amplifier. Research Square, preprint. doi: 10.21203/rs.3.rs-927386/v1
  5. van Hest, J.C.; Song, S.; Mason, A.; Post, R.; de Corato, M.; Mestre, R.; Yewdall, A.; Cao, S.; van der Hofstad, R.; Sanchez, S.; Abdelmohsen, L. Engineering transient dynamics of artificial cells by stochastic distribution of enzymes. ChemRxiv, preprint. doi: 10.33774/chemrxiv-2021-02c1d
  6. Zanon, P.R.A.; Yu, F.; Musacchio, P.; Lewald, L.; Zollo, M.; Krauskopf, K.; Mrdović, D.; Raunft, P.; Maher, T.E.; Cigler, M.; Chang, C.; Lang, K.; Toste, F.D.; Nesvizhskii, A.I.; Hacker, S.M. Profiling the proteome-wide selectivity of diverse electrophiles. ChemRxiv, preprint. doi: 10.33774/chemrxiv-2021-w7rss-v2
  7. Ast, J.; Novak, A.N.; Podewin, T.; Fine, N.H.F.; Jones, B.; Tomas, A.; Birke, R.; Roßmann, K.; Mathes, B:; Eichhorst, J.; Lehmann, M.; Linnemann, A.K.; Hodson, D.J.; Broichhagen, J. An expanded LUXendin color palette for GLP1R detection and visualization in vitro and in vivo. ChemRxiv, preprint. doi: 10.33774/chemrxiv-2021-7rngq
  8. Guarin, M.; Faelens, R.; Giusti, A.; De Croze, N.; Léonard, M.; Cabooter, D.; Annaert, P.; de Witte, P.; Ny, A. Spatiotemporal Imaging and Pharmacokinetic of Fluorescent Compounds in Zebrafish Eleuthero-Embryos After Different Routes of Administration. Research Square, preprint. doi: 10.21203/rs.3.rs-237483/v1
  9. Lee, M.S.; Hyun, H.; Park, I.; Kim, S.; Jang, D.-H.; Kim, S.; Im, J.-K.; Kim, H.; Lee, J.H.; Kwon, T.; Kang, J.H. Quantitative fluorescence in situ hybridization (FISH) of magnetically confined bacteria enables rapid determination of early-stage human bacteremia. medRxiv, preprint. doi: 10.1101/2021.02.19.21251962
  10. Rudack, T.; Teuber, C.; Scherlo, M.; Güldenhaupt, J.; Schartner, J.; Lübben, M.; Klare, J.P.; Gerwert, K.; Kötting, C. The Ras Dimer Structure. ChemRxiv, preprint. doi: 10.26434/chemrxiv.14039810.v1
  11. Singh, A.; Jothiprakasam, T.; Raghavan, J.V.; Jhunjhunwala, S. Sterile Inflammation Alters Neutrophil Kinetics in Mice. bioRxiv, preprint. doi: 10.1101/2021.02.12.430891
  12. Pishesha, N.; Harmand, T.; Smeding, L.; Ma, W.; Ludwig, L.; Janssen, R.; Islam, A.; Xie, Y.; Fang, T.; McCaul, N.; Pinney, W.; Sugito, H.; Ploegh, H. Single domain antibody-antigen adducts that target Class II MHC induce antigen-specific tolerance. Research Square, preprint. doi: 10.21203/rs.3.rs-192181/v1
  13. Shea, K.; Koide, H.; Okishima, A.; Hoshino, Y.; Kamon, Y.; Yoshimatsu, K.; Saito, K.; Yamauchi, I.; Ariizumi, S.; Oku, N.; Asai, T.; Zhou, Y.; Xiao, T.-H.; Goda, K. Synthetic hydrogel nanoparticles for sepsis therapy. Research Square, preprint. doi: 10.21203/rs.3.rs-150516/v1
  14. Carter, J.G.; Iturbe, L.O.; Duprey, J.-L.H.A.; Carter, I.R.; Southern, C.D.; Rana, M.; Bosworth, A. Sub-5-minute Detection of SARS-CoV-2 RNA using a Reverse Transcriptase-Free Exponential Amplification Reaction, RTF-EXPAR. medRxiv, preprint. doi: 10.1101/2020.12.31.20248236
  15. Yu, J.-H.; Steinberg, I.; Davis, R.M.; Malkovskiy, A.V.; Zlitni, A.; Chung, D.T.; Curet, L.D.; D’Souza, A.L.; Jung, K.o.; Chang, E.; Campbell, J.; Frostig, H.; Park, S.-m.; Pratx, G.; Gambhir, S.S. Noninvasive and Highly Multiplexed Five-Color Tumor Imaging of Near-Infrared Resonant Surface-Enhanced Raman Nanoparticles In Vivo. ChemRxiv, preprint. doi: 10.26434/chemrxiv.13232246.v1
  16. Park, D.J.; Yun, W.S.; Kim, W.C.; Park, J.-E.; Lee, S.H.; Ha, S.; Choi, J.S.; Key, J.; Seo, Y.J. Improvement of stem cell-derived exosome release efficiency by surface modified nanoparticles. Research Square, preprint. doi: 10.21203/rs.3.rs-42143/v1
  17. Sasaki, K.; Harada, M.; Yoshikawa, T.; Tagawa, H.; Harada, Y.; Yonemitsu, Y.; Ryujin, T.; Kishimura, A.; Mori, T.; Katayama, Y. Fc-Binding Antibody-Recruiting Molecules Targeting Prostate-Specific Membrane Antigen: Defucosylation of Antibody for Efficacy Improvement. ChemRxiv, preprint. doi: 10.26434/chemrxiv.12654602.v1
  18. Baker, Y.; Yuan, L.; Chen J.; Belle, R.; Carlisle, R.; El-Sagheer, A.; Brown, T. Expanding the Chemical Repertoire of DNA Nanomaterials Generated by Rolling Circle Amplification. ChemRxiv, preprint. doi: 10.26434/chemrxiv.12566963.v1
  19. Wang, Y.; Yao, J.; Cai, L.; Liu, T.; Wang, X.; Zhang, Y.; Zhou, Z.; Li, T.; Liu, M.; Lai, R.; Liu, X. Bone-targeted extracellular vesicles from mesenchymal stem cells for osteoporosis therapy. Research Square, preprint. doi: 10.21203/rs.3.rs-18279/v1
  20. Wang, Y.; Kathiresan, V.; Chen, Y.; Hu, Y.; Jiang, W.; Bai, G.; Liu, G.; Qin, P.Z.; Fang, X. Posttranscriptional Site-Directed Spin Labeling of Large RNAs with an Unnatural Base Pair System Under Non-Denaturing Conditions. ChemRxiv, preprint. doi: 10.26434/chemrxiv.12058914
  21. Toyonaga, T.; Keith, B.P.; Barrow, J.B.; Schaner, M.S.; Wolber, E.A.; Beasley, C.; Huling, J.; Wang, Y.; Allbritton, N.L.; Chaumont, N.; Sadiq, T.S.; Koruda, M.j.; Rahbar, R.; Furey, T.S.; Sethupathy, P.; Sheikh, S.Z. Decreased Colonic Activin Receptor-Like Kinase 1 Disrupts Epithelial Barrier integrity and is associated with a poor clinical outcome in Crohn's disease. bioRxiv, preprint. doi: 10.1101/2020.02.21.960070
  22. Mohammad-Beigi, H.; Hayashi, Y.; Zeuthen, C.M.; Eskandari, H.; Scavenius, C.; Juul-Madsen, K.; Vorup-Jensen, T.; Enghild, J.J.; Sutherland, D.S. Mapping and identification of soft corona proteins at nanoparticles and their impact on cellular association. bioRxiv, preprint. doi: 10.1101/2020.02.05.924480
  23. Bakker, R.; Mani, M.; Carthew, R.W. The Wg and Dpp morphogens regulate gene expression by modulating the frequency of transcriptional bursts. bioRxiv, preprint. doi: 10.1101/2020.01.24.918623
  24. Wells, C.I.; Al-Ali, H.; Andrews, D.M.; Asquith, C.R.M.; Axtman, A.D.; Chung, M.; Dikic, I.; Ebner, D.; Elkins, J.M.; Ettmayer, P.; Fischer, C.; Frederiksen, M.; Gray, N.S.; Hatch, S.; Knapp, S.; Lee, S.; Lücking, U.; Michaelides, M.; Mills, C.E.; Müller, S.; Owen, D.; Picado, A.; Ramadan, K.; Saikatendu, K.S.; Schröder, M.; Stolz, A.; Tellechea, M.; Treiber, D.K.; Turunen, B.J.; Vilar, S.; Wang, J.; Zuercher, W.J.; Willson, T.M.; Drewry, D.H. The Kinase Chemogenomic Set (KCGS): An open science resource for kinase vulnerability identification. bioRxiv, preprint. doi: 10.1101/2019.12.22.886523
  25. Janiszewski, T.; Kołt, S.; Kaiserman, D.; Snipas, S.; Li, S.; Kulbacka, J.; Saczko, J.; Bovenschen, N.; Salvesen, G.; Drąg, M.; Bird, P.I.; Kasperkiewicz, P. Noninvasive optical detection of Granzyme B from natural killer cells using enzyme-activated fluorogenic probes. bioRxiv, preprint. doi: 10.1101/2019.12.16.875070
  26. Poreba, M.; Groborz, K.; Rut, W.; Pore, M.; Snipas, S.J.; Vizovisek, M.; Turk, B.; Kuhn, P.; Drag, M.; Salvesen, G.S. The Activome: multiplexed probing of activity of proteolytic enzymes using mass cytometry-compatible activity-based probes (TOF-probes). bioRxiv, preprint. doi: 10.1101/775627
  27. Yang, M.; Zhang, L.; Sun, R.; Zhong, W.; Yang, Y.; Chen, C. Streptococcus pyogenes Cas9 displays biased one-dimensional diffusion on dsDNA to search for a target. bioRxiv, preprint. doi: 10.1101/754564
  28. Hinman, S.; Wang, Y.; Allbritton, N. Photopatterned Membranes and Chemical Gradients Enable Scalable Phenotypic Organization of Primary Human Colon Epithelial Models. ChemRxiv, preprint. doi: 10.26434/chemrxiv.9759605.v1
  29. Si, Y.; Guenter, R.; Ou, J.; Kim, S.; Ernst, P.; Carter, A.M.; Bibb, J.A.; Markert, J.M.; Jaskula-Sztul, R.; Zhou, L.; Chen, H.; Liu, X. Novel anti-somatostatin receptor 2 antibody-drug conjugate for neuroendocrine cancer therapy. bioRxiv, preprint. doi: 10.1101/688184
  30. Budiardjo, S.J.; Deay, J.J.; Calkins, A.L.; Wimalasena, V.K.; Montezano, D.; Biteen, J.S.; Slusky, J.S.G. Colicin E1 Fragments Potentiate Antibiotics by Plugging TolC. bioRxiv, preprint. doi: 10.1101/692251
  31. Ast, J.; Arvaniti, A.; Fine, N.H.F.; Nasteska, D.; Ashford, F.B.; Stamataki, Z.M Koszegi, Z.; Bacon, A.; Trapp, S.; Jones, B.J.; Hastoy, B.; Tomas, A.; Reissaus, C.; Linnemann, A.K.; D'Este, E.; Calebiro, D.; Johnsson, K.; Podewin, T.; Broichhagen, J.; Hodson, D.J. LUXendins reveal endogenous glucagon-like peptide-1 receptor distribution and dynamics. bioRxiv, preprint. doi: 10.1101/557132
  32. Haider, N.; Dutt, P.; van de Kooij, B.; Yaffe, M.B.; Stambolic, V. NEK10 tyrosine phosphorylates p53 and controls its transcriptional activity. bioRxiv, preprint. doi: 10.1101/516971
  33. Galstyan, A.; Chiechi, A.; Korman, A.J.; Sun, T.; Isreal, L.L.; Braubach, O.; Patil, R.; Shatalova, E.; Ljubimov, V.A.; Markman, J.; Grodzinski, Z.; Black, K.L.; Penichet, M.L.; Holler, E.; Ljubimov, A.V.; Ding, H.; Ljubimova, J.Y. Nano immunoconjugates crossing blood-brain barrier activate local brain tumor immune system for glioma treatment. bioRxiv, preprint. doi: 10.1101/466508
  34. Norred, S.E.; Dabbs, R.M.; Chauhan, G.; Caveney, P.M.; Collier, C.P.; Abel, S.M.; Simpson, M.L. Synergistic interactions between confinement and macromolecular crowding spatially order transcription and translation in cell-free expression. bioRxiv, 2018. doi: 10.1101/445544

2023

  1. Psotta, C.; Chaturvedi, V.; Gonzalez-Martinez, J.F.; Sotres, J.; Falk, M. Portable Prussian Blue-Based Sensor for Bacterial Detection in Urine. Sensors, 2023, 23(1), 388. doi: 10.3390/s23010388

2022

  1. Gruenke, P.R.; Aneja, R.; Welbourn, S.; Ukah, O.B.; Sarafianos, S.G.; Burke, D.H.; Lange, M.J. Selection and identification of an RNA aptamer that specifically binds the HIV-1 capsid lattice and inhibits viral replication. Nucleic Acids Research, 2022, 50(3), 1701–1717. doi: 10.1093/nar/gkab1293
  2. Bellat, V.; Michel, A.O.; Thomas, C.; Stokol, T.; Choi, B.; Law, B. A urinary drug-disposing approach as an alternative to intravesical chemotherapy for treating non-muscle invasive bladder cancer. Cancer Research, 2022, 82(7), 1409–1422. doi: 10.1158/0008-5472.CAN-21-2897
  3. Yin, X.; Ren, J.; Lan, W.; Chen, Y.; Ouyang, M.; Su, H.; Zhang, L.; Zhu, J.; Zhang, C. Microfluidics-assisted optimization of highly adhesive haemostatic hydrogel coating for arterial puncture. Bioactive Materials, 2022, 12, 133-142. doi: 10.1016/j.bioactmat.2021.10.009
  4. Delvaux, N.A.; Mathew, B.; Rice, K.G. Fluorescent Labeling of Plasmid DNA for Gene Delivery: Implications of Dye Hydrophobicity on Labeling Efficiencies and Nanoparticle Size. Analytical Biochemistry, 2022, 644, 113895. doi: 10.1016/j.ab.2020.113895
  5. Kolyvanova, M.A.; Klimovich, M.A.; Shibaeva, A.V.; Koshevaya, E.D.; Bushmanov, Y.A.; Belousov, A.V.; Kuzmin, V.A.; Morozov, V.N. Cholesteric liquid-crystalline DNA – a new type of chemical detector of ionizing radiation. Liquid Crystals, 2022, 49(10). doi: 10.1080/02678292.2022.2032854
  6. Sun, F.; Wang, Y.; Wang, Q.; Wang, X.; Yao, P.; Feng, W.; Yuan, Q.; Qi, X.; Chen, S.; Pu, W.; Huang, R.; Dai, Q.; lv, J.; Wang, Q.; Shen, W.; Xia, P.; Zhang, D. Self-Illuminating Triggered Release of Therapeutics from Photocleavable Nanoprodrug for the Targeted Treatment of Breast Cancer. ACS Applied Materials & Interfaces, 2022, 14(7), 8766–8781. doi: 10.1021/acsami.1c21665
  7. Sokolov, A. V., Isakova-Sivak, I. N., Mezhenskaya, D. A., Kostevich, V. A., Gorbunov, N. P., Elizarova, A. Y., Matyushenko, V. A.; Berson, Y. M.; Grudinina, N. A.; Kolmakov, N. N.; Zabrodskaya, Y. A.; Komlev, A. S.; Semak, I. V.; Budevich, A. I.; Rudenko, L. G.; Vasilyev, V. B. Molecular mimicry of the receptor-binding domain of the SARS-CoV-2 spike protein: from the interaction of spike-specific antibodies with transferrin and lactoferrin to the antiviral effects of human recombinant lactoferrin. BioMetals, 2022. doi: 10.1007/s10534-022-00458-6
  8. Sokolov, A.; Isakova-Sivak, I.; Grudinina, N.; Mezhenskaya, D.; Litasova, E.; Kostevich, V.; Stepanova, E.; Rak, A.; Sychev, I.; Kirik, O.; & Rudenko, L. Ferristatin II Efficiently Inhibits SARS-CoV-2 Replication in Vero Cells. Viruses, 2022, 14(2), 317. doi: 10.3390/v14020317
  9. Rueda-Alaña, E.; García-Moreno, F. Time in Neurogenesis: Conservation of the Developmental Formation of the Cerebellar Circuitry. Brain, Behavior and Evolution, 2022, 97, 33-47. doi: 10.1159/000519068
  10. Diaz-Salmeron, R.; Toussaint, B.; Cailleau, C.; Ponchel, G.; Bouchemal, K. Morphology-Dependent Bioadhesion and Bioelimination of Hyaluronan Particles Administered in the Bladder. Advanced NanoBiomed Research, 2022, 2(5), 2100138. doi: 10.1002/anbr.202100138
  11. Maltsev, D.I.; Mellanson, K.A.; Belousov, V.V.; Enikolopov, G.N.; Podgorny, O.V. The bioavailability time of commonly used thymidine analogues after intraperitoneal delivery in mice: labeling kinetics in vivo and clearance from blood serum. Histochemistry and Cell Biology, 2022, 157, 239–250. doi: 10.1007/s00418-021-02048-y
  12. Ivanova, A.; Gruzova, O.; Ermolaeva, E.; Astakhova, O.; Itaman, S.; Enikolopov, G.; Lazutkin, A. Synthetic Thymidine Analog Labeling without Misconceptions. Cells, 2022, 11(12), 1888. doi: 10.3390/cells11121888
  13. Han, Z.; Chen, C.; Xu, X.; Bai, R.; Staedtke, V.; Huang, J.; Chan, K.W.Y.; Xu, J.; Kamson, D.O.; Wen, Z.; Knutsson, L.; Zijl, P.C.M.; Liu, G. Dynamic contrast-enhanced CEST MRI using a low molecular weight dextran. NMR in Biomedicine, 2022, 35(3), e4649. doi: 10.1002/nbm.4649
  14. Lee, J.; Kang, Y.K.; Oh, E.; Jeong, J.; Im, S.H.; Kim, D.K.; Lee, H.; Kim, S.-G.; Jung, K.; Chung, H.J. Nano-assembly of a Chemically Tailored Cas9 Ribonucleoprotein for In Vivo Gene Editing and Cancer Immunotherapy. Chemistry of Materials, 2022, 34(2), 547–561. doi: 10.1021/acs.chemmater.1c02844
  15. Vakhrushev, A.V.; Demin, A.M.; Krasnov, V.P. Synthesis of fluorescent GRGD peptide derivatives. AIP Conference Proceedings, 2022, 2390(1), 020083. doi: 10.1063/5.0069274
  16. Li, F.; Wei, Y.; Zhao, J.; Zhang, L.; Li, Q. In vivo pharmacokinetic study of a Cucurbita moschata polysaccharide after oral administration. International Journal of Biological Macromolecules, 2022, 203, 19–28. doi: 10.1016/j.ijbiomac.2022.01.111
  17. Kang, Y.; Nack, L.M.; Liu, Yang and.; Qi, B.; Huang, Y.; Liu, Z.; Chakraborty, I.; Schulz, F.; Ahmed, A.A.A.; Poveda, M.C.; Hafizi, F.; Roy, S.; Mutas, M.; Holzapfel, M.; Sanchez-Cano, C.; Wegner, K.D.; Feliu, N.; Parak, W.J. Quantitative considerations about the size dependence of cellular entry and excretion of colloidal nanoparticles for different cell types. ChemTexts, 2022, 8(1), 9. doi: 10.1007/s40828-021-00159-6
  18. Chung, I.J.; Moon, H.; Jeon, S.I.; Lee, H.J.; Ahn, C.-H. Ultrasound-triggered imaging and drug delivery using microbubble-self-aggregate complexes. Journal of Biomaterials Science, Polymer Edition, 2022, 33(1), 57–76. doi: 10.1080/09205063.2021.1976362
  19. Mamot, A.; Sikorski, P.J.; Siekierska, A.; de Witte, P.; Kowalska, J.; Jemielity, J. Ethylenediamine derivatives efficiently react with oxidized RNA 3′ ends providing access to mono and dually labelled RNA probes for enzymatic assays and in vivo translation. Nucleic Acids Research, 2022, 50(1), e3. doi: 10.1093/nar/gkab867
  20. Jobbins, A.M.; Campagne, S.; Weinmeister, R.; Lucas, C.M.; Gosliga, A.R.; Clery, A.; Chen, L.; Eperon, L.P.; Hodson, M.J.; Hudson, A.J.; Allain, F.H.T.; Eperon, I.C. Exon-independent recruitment of SRSF1 is mediated by U1 snRNP stem-loop 3. The EMBO Journal, 2022, 41(1), e107640. doi: 10.15252/embj.2021107640
  21. Kumar, A.; Singam, A.; Swaminathan, G.; Killi, N.; Tangudu, N.K.; Jose, J.; Rathna G.V.N.; Kumar, L.D. Combinatorial therapy using RNAi and curcumin nano-architectures regresses tumors in breast and colon cancer models. Nanoscale, 2022, 14(2), 492–505. doi: 10.1039/D1NR04411G
  22. Mohale, M.; Gundampati, R.K.; Thallapuranam, S.; Heyes, C.D. Site-specific labeling and functional efficiencies of human fibroblast growth Factor-1 with a range of fluorescent dyes in the flexible N-Terminal region and a rigid β-turn region. Analytical Biochemistry, 2022, 640, 114524. doi: 10.1016/j.ab.2021.114524
  23. Iacobazzi, R.M.; Arduino, I.; Di Fonte, R.; Lopedota, A.A.; Serratì, S.; Racaniello, G.; Bruno, V.; Laquintana, V.; Lee, B.-C.; Silvestris, N.; Leonetti, F.; Denora, N.; Porcelli, L.; Azzariti, A. Microfluidic-Assisted Preparation of Targeted pH-Responsive Polymeric Micelles Improves Gemcitabine Effectiveness in PDAC: In Vitro Insights. Cancers, 2022, 14(1), 5. doi: 10.3390/cancers14010005
  24. Guo, H.; Liu, L.; Hu, Q.; Dou, H. Monodisperse ZIF-8@dextran nanoparticles co-loaded with hydrophilic and hydrophobic functional cargos for combined near-infrared fluorescence imaging and photothermal therapy. Acta Biomaterialia, 2022, 137, 290–304. doi: 10.1016/j.actbio.2021.10.006
  25. Nekrasov, N.; Jaric, S.; Kireev, D.; Emelianov, A.V.; Orlov, A.V.; Gadjanski, I.; Nikitin, P.I.; Akinwande, D.; Bobrinetskiy, I. Real-time detection of ochratoxin A in wine through insight of aptamer conformation in conjunction with graphene field-effect transistor. Biosensors and Bioelectronics, 2022, 200, 113890. doi: 10.1016/j.bios.2021.113890

2021

  1. Petrunina, N.A.; Lebedev, V.V.; Kirillova, Y.G.; Aralov, A..V.; Varizhuk, A.M.; Sardushkin, M.V. DNA Intercalated Motifs with Non-Nucleoside Inserts. Russian Journal of Bioorganic Chemistry, 2021, 47(6), 1341–1344. doi: 10.1134/S1068162021060212
  2. Stepanova, I.A.; Lebedeva, A.N.; Shik, A..V.; Skorobogatov, E.V.; Beklemishev, M.K. Recognition and Determination of Sulfonamides by Near-IR Fluorimetry Using Their Effect on the Rate of the Catalytic Oxidation of a Carbocyanine Dye by Hydrogen Peroxide. Journal of Analytical Chemistry, 2021, 76(12), 1399–1407. doi: 10.1134/S1061934821120121
  3. Huang, S.-K.; Whitney, P.H.; Dutta, S.; Shvartsman, S.Y.; Rushlow, C.A. Spatial organization of transcribing loci during early genome activation in Drosophila. Current Biology, 2021, 31(22), 5102–5110. doi: 10.1016/j.cub.2021.09.027
  4. do Valle Gomes, M.Z.; Masdeu, G.; Eiring, P.; Kuhlemann, A.; Sauer, M.; Åkerman, B:; Palmqvist, A.E.C. Improved biocatalytic cascade conversion of CO2 to methanol by enzymes Co-immobilized in tailored siliceous mesostructured cellular foams. Catalysis Science & Technology, 2021, 11(21), 6952–6959. doi: 10.1039/D1CY01354H
  5. Lee, R.; Erstling, J.A.; Hinckley, J.A.; Chapman, D.V.; Wiesner, U.B. Addressing Particle Compositional Heterogeneities in Super-Resolution-Enhanced Live-Cell Ratiometric pH Sensing with Ultrasmall Fluorescent Core–Shell Aluminosilicate Nanoparticles. Advanced Functional Materials, 2021, 31(45), 2106144. doi: 10.1002/adfm.202106144
  6. Mu, Q.; Lin, G.; Jeon, M.; Wang, H.; Chang, F.-C.; Revia, R.A.; Yu, J.; Zhang, M. Iron oxide nanoparticle targeted chemo-immunotherapy for triple negative breast cancer. Materials Today, 2021, 50, 149–169. doi: 10.1016/j.mattod.2021.08.002
  7. Abbasov, M.E.; Kavanagh, M.E.; Ichu, T.-A.; Lazear, M.R.; Tao, Y.; Crowley, V.M.; am Ende, C.W.; Hacker, S.M.; Ho, J.; Dix, M.M.; Suciu, R.; Hayward, M.M.; Kiessling, L.L.; Cravatt, B.F. A proteome-wide atlas of lysine-reactive chemistry. Nature Chemistry, 2021, 13(11), 1081–1092. doi: 10.1038/s41557-021-00765-4
  8. Lee, J.-R.; Park, B.-W.; Park, J.-H.; Lim, S.; Kwon, S.P.; Hwang, J.-W.; Kim, H.; Park, H.-J.; Kim, B.-S. Local delivery of a senolytic drug in ischemia and reperfusion-injured heart attenuates cardiac remodeling and restores impaired cardiac function. Acta Biomaterialia, 2021, 135, 520--533. doi: 10.1016/j.actbio.2021.08.028
  9. Igarashi, K.; Cabral, H.; Hong, T.; Anraku, Y.; Mpekris, F.; Stylianopoulos, T.; Khan, T.; Matsumoto, A.; Kataoka, K.; Matsumoto, Y.; Yamasoba, T. Vascular Bursts Act as a Versatile Tumor Vessel Permeation Route for Blood-Borne Particles and Cells. Small, 2021, 17(42), 2103751. doi: 10.1002/smll.202103751
  10. Nkanga, C.I.; Chung, Y.H.; Shukla, S.; Zhou, J.; Jokerst, J.V.; Steinmetz, N.F. The in vivo fate of tobacco mosaic virus nanoparticle theranostic agents modified by the addition of a polydopamine coat. Biomaterials Science, 2021, 9(21), 7134–7150. doi: 10.1039/D1BM01113H
  11. Schmidt, V.; Horváth, C.; Dong, H.; Blüher, M.; Qvist, P.; Wolfrum, C.; Willnow, T.E. SORLA is required for insulin-induced expansion of the adipocyte precursor pool in visceral fat. Journal of Cell Biology, 2021, 220(12), e202006058. doi: 10.1083/jcb.202006058
  12. Lobov, A.A.; Babkina, I.Y.; Danilov, L.G.; Masharskiy, A.E.; Predeus, A.V.; Mikhailova, N.A.; Granovitch, A.I.; Maltseva, A.L. Species-Specific Proteins in the Oviducts of Snail Sibling Species: Proteotranscriptomic Study of Littorina fabalis and L. obtusata. Biology, 2021, 10(11), 1087. doi: 10.3390/biology10111087
  13. Francis, D.M. Manspeaker, M.P.; Archer, P.A.; Sestito, L.F.; Heiler, A.J.; Schudel, A.; Thomas, S.N. Drug-eluting immune checkpoint blockade antibody-nanoparticle conjugate enhances locoregional and systemic combination cancer immunotherapy through T lymphocyte targeting. Biomaterials, 2021, 279, 121184. doi: 10.1016/j.biomaterials.2021.121184
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  152. Anson, F.; Kanjilal, P.; Thayumanavan, S.; Hardy, J.A. Tracking Exogenous Intracellular Casp-3 Using Split GFP. Protein Science, 2021, 30(2), 366–380. doi: 10.1002/pro.3992
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  154. Martins dos Santos, A.; Bagliotti Meneguin, A.; Taslima Akhter, D.; Fletcher, N.; Houston, Z.H.; Bell, C.; Thurecht, K.J.; Palmira Daflon Gremião, M. Understanding the role of colon-specific microparticles based on retrograded starch/pectin in the delivery of chitosan nanoparticles along the gastrointestinal tract. European Journal of Pharmaceutics and Biopharmaceutics, 2021, 158, 371–378. doi: 10.1016/j.ejpb.2020.12.004
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2020

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  2. Molotkov, A.; Bhatt, N.; Doubrovin, M.; Castrillon, J.; Massa, C.; Gerber, A.; D'Armiento, J.; Goldklang, M.; Mintz, A. Multimodality molecular imaging of the alveolar-capillary barrier in lung disease using albumin based optical and PET tracers. Molecular Biomedicine, 2020, 1(1), 17. doi: 10.1186/s43556-020-00020-1
  3. Gusev, I.D.; Firsov, A.M.; Chertkova, R.V.; Kotova, E.A.; Dolgikh, D.A.; Kirpichnikov, M.P.; Antonenko, Y.N. Study of Interaction of Fluorescent Cytochrome C with Liposomes, Mitochondria, and Mitoplasts by Fluorescence Correlation Spectroscopy. Russian Journal of Bioorganic Chemistry, 2020, 46(6), 1162–1171. doi: 10.1134/S1068162020060084
  4. Liu, Z.; Yuan, J.; Lasorella, A.; Iavarone, A.; Bruce, J.N.; Canoll, P.; Sims, P.A. Integrating single-cell RNA-seq and imaging with SCOPE-seq2. Scientific Reports, 2020, 10, 19482. doi: 10.1038/s41598-020-76599-w
  5. Wang, J.; Li, T.; Wang, J.-L.; Xu, Z.; Meng, W.; Wu, Q.-F. Talpid3-Mediated Centrosome Integrity Restrains Neural Progenitor Delamination to Sustain Neurogenesis by Stabilizing Adherens Junctions. Cell Reports, 2020, 33(11), 108495. doi: 10.1016/j.celrep.2020.108495
  6. Peng, B.; Tong, Z.; Tong, W.Y.; Pasic, P.J.; Oddo, A.; Dai, Y.; Luo, M.; Frescene, J.; Welch, N.G.; Easton, C.D.; Thissen, H.; Voelcker, N.H. In Situ Surface Modification of Microfluidic Blood–Brain-Barriers for Improved Screening of Small Molecules and Nanoparticles. ACS Applied Materials & Interfaces, 2020, 12(51), 56753–56766. doi: 10.1021/acsami.0c17102
  7. Poudel, K.; Banstola, A.; Gautam, M.; Soe, Z.; Phung, C.D.; Pham, L.M.; Jeong, J.-H.; Choi, H.-G.; Ku, S.K.; Tran, T.H.; Yong, C.S.; Kim, J.O. Macrophage-Membrane-Camouflaged Disintegrable and Excretable Nanoconstruct for Deep Tumor Penetration. ACS Applied Materials & Interfaces, 2020, 12(51), 56767–56781. doi: 10.1021/acsami.0c17235
  8. Boersma, S.; Rabouw, H.H.; Bruurs, L.J.M.; Pavlovič, T.; van Vliet, A.L.W.; Beumer, J.; Clevers, H.; van Kuppeveld, F.J.M.; Tanenbaum, M.E. Translation and Replication Dynamics of Single RNA Viruses. Cell, 2020, 183(7), 1930–1945.e23. doi: 10.1016/j.cell.2020.10.019
  9. Brachi, G.; Ruiz-Ramírez, J.; Dogra, P.; Wang, Z.; Cristini, V.; Ciardelli, G.; Rostomily, R.C.; Ferrari, M.; Mikheev, A.M.; Blanco, E.; Mattu, C. Intratumoral injection of hydrogel-embedded nanoparticles enhances retention in glioblastoma. Nanoscale, 2020, 12(46), 23838–23850. doi: 10.1039/d0nr05053a
  10. Yang, S.-J.; Huang, C.-H.; Yang, J.-C.; Wang, C.-H.; Shieh, M.-J. Residence Time-Extended Nanoparticles by Magnetic Field Improve the Eradication Efficiency of Helicobacter pylori. ACS Applied Materials & Interfaces, 2020, 12(49), 54316–54327. doi: 10.1021/acsami.0c13101
  11. Qiu, C.-X.; Bai, X.-F.; Shen, Y.; Zhou, Z.; Pan, L.-Q.; Xu, Y.-C.; Zhao, W.-B.; Chen, S.-Q. Specific Inhibition of Tumor Growth by T Cell Receptor-Drug Conjugates Targeting Intracellular Cancer-Testis Antigen NY-ESO-1/LAGE-1. Bioconjugate Chemistry, 2020, 31(12), 2767–2778. doi: 10.1021/acs.bioconjchem.0c00548
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  25. Landry, M.R.; DuRoss, A.N.; Neufeld, M.J.; Hahn, L.; Sahay, G.; Luxenhofer, R.; Sun, C. Low Dose Novel PARP-PI3K Inhibition via Nanoformulation Improves Colorectal Cancer Immuno-Radiotherapy. Materials Today Bio, 2020, 8, 100082. doi: 10.1016/j.mtbio.2020.100082
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2019

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  5. Bayat, N.; McOrist, N.; Ariotti, N.; Lai, M.; Sia, K.C.; Li, Y.; Grace, J.L.; Quinn, J.F.; Whittaker, M.R.; Kavallaris, M.; Davis, T.P.; Lock, R.B. Thiol-Reactive Star Polymers Functionalized with Short Ethoxy-Containing Moieties Exhibit Enhanced Uptake in Acute Lymphoblastic Leukemia Cells. International Journal of Nanomedicine, 2019, 14, 9795–9808. doi: 10.2147/IJN.S220326
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  12. Taskova, M.; Astakhova, K. Fluorescent Oligonucleotides with Bis(prop-2-yn-1-yloxy)butane-1,3-diol Scaffold Rapidly Detect Disease-Associated Nucleic Acids. Bioconjugate Chemistry, 2019, 30(12), 3007–3012. doi: 10.1021/acs.bioconjchem.9b00746
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  14. Jeon, M.; Lin, G.; Stephen, Z.R.; Kato, F.L.; Zhang, M. Paclitaxel-Loaded Iron Oxide Nanoparticles for Targeted Breast Cancer Therapy. Advanced Therapeutics, 2019, 2(12), 1900081. doi: 10.1002/adtp.201900081
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2018

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  4. Smith, W.J.; Wang, G.; Gaikwad, H.; Vu, V.P.; Groman, E.; Bourne, D.W.A.; Simberg, D. Accelerated Blood Clearance of Antibodies by Nanosized Click Antidotes. ACS Nano, 2018, 12(12), 12523–12532. doi: 10.1021/acsnano.8b07003
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  9. Crupi, A.N.; Nunnelee, J.S.; Taylor, D.J.; Thomas, A.; Vit, J.-P.; Riera, C.E.; Gottlieb, R.A.; Goodridge, H.S. Oxidative muscles have better mitochondrial homeostasis than glycolytic muscles throughout life and maintain mitochondrial function during aging. Aging, 2018, 10(11), 3327–3352. doi: 10.18632/aging.101643
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2017

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2016

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2015

  1. Alam, F.; Chung, S.W.; Hwang, S.R.; Kim, J.-y.; Park, J.; Moon, H.T.; Byun, Y. Preliminary safety evaluation of a taurocholate-conjugated low-molecular-weight heparin derivative (LHT7): a potent angiogenesis inhibitor. Journal of Applied Toxicology, 2015, 35(1), 104–115. doi: 10.1002/jat.2995
  2. Gremse, F.; Doleschel, D.; Zafarnia, S.; Babler, A.; Jahnen-Dechent, W.; Lammers, T.; Lederle, W.; Kiessling, F. Hybrid µCT-FMT imaging and image analysis. Journal of Visualized Experiments, 2015, e52770. doi: 10.3791/52770
  3. Wang, H.; Li, D.; Liu, S.; Liu, R.; Yuan, H.; Krasnoperov, V.; Shan, H.; Conti, P.S.; Gill, P.S.; Li, Z. Small-Animal PET Imaging of Pancreatic Cancer Xenografts Using a 64Cu-Labeled Monoclonal Antibody, MAb159. Journal of Nuclear Medicine, 2015, 56(6), 908–913. doi: 10.2967/jnumed.115.155812
  4. Mahmoodi, M.M.; Rashidian, M.; Zhang, Y.; Distefano, M.D. Application of meta- and para- Phenylenediamine as Enhanced Oxime Ligation Catalysts for Protein Labeling, PEGylation, Immobilization, and Release. Current Protocols in Protein Science, 2015, 79, 15.4.1–15.4.28. doi: 10.1002/0471140864.ps1504s79
  5. Zhang, Rui and Yang, Jiyuan and Chu, Te-Wei and Hartley, Jonathan M. and Kopeček, Jindřich. Multimodality Imaging of Coiled-Coil Mediated Self-Assembly in a "Drug-Free" Therapeutic System. Advanced Healthcare Materials, 2015, 4(7), 1054–1065. doi: 10.1002/adhm.201400679
  6. Shrivastava, R.; Köster, D.; Kalme, S.; Mayor, S.; Neerathilingam, M. Tailor-made ezrin actin binding domain to probe its interaction with actin in-vitro. PLoS One, 2015, 10(4), e0123428. doi: 10.1371/journal.pone.0123428
  7. Evans, L.E.; Cheeseman, M.D.; Yahya, N.; Jones, K. Investigating Apoptozole as a Chemical Probe for HSP70 Inhibition. PLoS One, 2015, 10(10), e0140006. doi: 10.1371/journal.pone.0140006
  8. Schembri, L.S.; Stoddart, L.A.; Briddon, S.J.; Kellam, B.; Canals, M.; Graham, B.; Scammells, P.J. Synthesis, Biological Evaluation, and Utility of Fluorescent Ligands Targeting the μ-Opioid Receptor. Journal of Medicinal Chemistry, 2015, 58(24), 9764–9767. doi: 10.1021/acs.jmedchem.5b01664
  9. Chu, D.; Gao, J.; Wang, Z. Neutrophil-Mediated Delivery of Therapeutic Nanoparticles across Blood Vessel Barrier for Treatment of Inflammation and Infection. ACS Nano, 2015, 9(12), 11800–11811. doi: 10.1021/acsnano.5b05583
  10. Rudnick-Glick, S.; Corem-Salkmon, E.; Grinberg, I.; Yehuda, R.; Margel, S. Near IR fluorescent conjugated poly(ethylene glycol)bisphosphonate nanoparticles for in vivo bone targeting in a young mouse model. Journal of Nanobiotechnology, 2015, 13(1), 80. doi: 10.1186/s12951-015-0126-0
  11. Bu, J.; Pilo, A.L.; McLuckey, S.A. Gas Phase Click Chemistry via Ion/Ion Reactions. International Journal of Mass Spectrometry, 2015, 390, 118–123. doi: 10.1016/j.ijms.2015.05.010
  12. Wang, Z.; Zourelias, L.; Wu, C.; Edwards, P.C.; Trombetta, M.; Passineau, M.J. Ultrasound-assisted nonviral gene transfer of AQP1 to the irradiated minipig parotid gland restores fluid secretion. Gene Therapy, 2015, 22, 739–749. doi: 10.1038/gt.2015.36
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  14. Lehtivuori, H.; Bhattacharya, S.;Angenent-Mari, N.M.; Satyshur, K.A.; Forest, K.T. Removal of Chromophore-Proximal Polar Atoms Decreases Water Content and Increases Fluorescence in a Near Infrared Phytofluor. Frontiers in Molecular Biosciences, 2015, 2, 65. doi: 10.3389/fmolb.2015.00065
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  16. Sun, L.; Gai, Y.; Anderson, C.J.; Zeng, D. Highly-efficient and versatile fluorous-tagged Cu(I)-catalyzed azide–alkyne cycloaddition ligand for preparing bioconjugates. Chemical Communications, 2015, 51, 17072–17075. doi: 10.1039/C5CC06858D
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  19. Gao, D.; Zhang, P.; Liu, C.; Chen, C.; Gao, G.; Wu, Y.; Sheng, Z.; Song, L.; Cai, L. Compact chelator-free Ni-integrated CuS nanoparticles with tunable near-infrared absorption and enhanced relaxivity for in vivo dual-modal photoacoustic/MR imaging. Nanoscale, 2015, 7, 17631–17636. doi: 10.1039/C5NR05237H
  20. Demillo, V.G.; Zhu, X. Zwitterionic amphiphile coated magnetofluorescent nanoparticles – synthesis, characterization and tumor cell targeting. Journal of Materials Chemistry B, 2015, 3, 8328–8336. doi: 10.1039/C5TB01116G
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  29. Bruckman, M.; Randolph, L.; Gulati, N.; Stewart, P.; Steinmetz, N.F. Silica mineralization of Gd(DOTA)-loaded viral nanoparticles enhances MRI relaxivity and avoids immune recognition. Journal of Materials Chemistry B, 2015, 3(38), 7503–7510. doi: 10.1039/c5tb01014d
  30. Yu, Q.; Wei, Z.; Shi, J.; Guan, S.; Du, N.; Shen, T.; Tang, H.; Jia, B.; Wang, F.; Gan, Z. Polymer-Doxorubicin Conjugate Micelles Based on Poly(ethylene glycol) and Poly(N-(2-hydroxypropyl) methacrylamide): Effect of Negative Charge and Molecular Weight on Biodistribution and Blood Clearance. Biomacromolecules, 2015, 16(9), 2645–2655. doi: 10.1021/acs.biomac.5b00460
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2014

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  43. Nienhaus, L.; Gross, D.E.; Xue, Z.; Moore, J.S.; Gruebele, M. Intramolecular energy transfer in a synthetic dendron-based light harvesting system. Journal of Photochemistry and Photobiology A: Chemistry, 2014, 295, 26-33. doi: 10.1016/j.jphotochem.2014.08.014
  44. Nobori, T.; Shiosaki, S.; Mori, T.; Toita, R.; Kim, C.W.; Nakamura, Y.; Kishimura, A.; Niidome, T.; Katayama, Y. Fluorescent Polyion Complex Nanoparticle That Incorporates an Internal Standard for Quantitative Analysis of Protein Kinase Activity. Bioconjugate Chemistry, 2014, 25(5), 869-872. doi: 10.1021/bc500142j
  45. Novo, L.; Rizzo, L.Y.; Golombek, S.K.; Dakwar, G.R.; Lou, B.; Remaut, K.; Mastrobattista, E.; van Nostrum, C.F.; Jahnen-Dechent, W.; Kiessling, F. et al. Decationized polyplexes as stable and safe carrier systems for improved biodistribution in systemic gene therapy. Journal of Controlled Release, 2014, 195, 162-175. doi: 10.1016/j.jconrel.2014.08.028
  46. Palsuledesai, C.C.; Ochocki, J.D.; Markowski, T.W.; Distefano, M.D. A combination of metabolic labeling and 2D-DIGE analysis in response to a farnesyltransferase inhibitor facilitates the discovery of new prenylated proteins. Molecular BioSystems, 2014, 10(5), 1094-1103. doi: 10.1039/c3mb70593e
  47. Park, S.; Kim, Y.-J.; Jon, S. A high-affinity peptide for nicotinic acetylcholine receptor-α1 and its potential use in pulmonary drug delivery. Journal of Controlled Release, 2014, 192, 141-147. doi: 10.1016/j.jconrel.2014.07.006
  48. Rand, M.D.; Montgomery, S.L.; Prince, L.; Vorojeikina, D. Developmental Toxicity Assays Using the Drosophila Model. Current Protocols in Toxicology, 2014, 1.12.1-1.12.20. doi: 10.1002/0471140856.tx0112s59
  49. Schulze, R.J.; Komar, J.; Botte, M.; Allen, W.J.; Whitehouse, S.; Gold, V.A.M.; Lycklama a Nijeholt, J.A.; Huard, K.; Berger, I.; Schaffitzel, C. et al. Membrane protein insertion and proton-motive-force-dependent secretion through the bacterial holo-translocon SecYEG-SecDF-YajC-YidC. Proceedings of the National Academy of Sciences of the U.S.A., 2014, 111(13), 4844-4849. doi: 10.1073/pnas.1315901111
  50. Shebl, B.; Norman, Z.; Cornish, P.V. Ribosome Structure and Dynamics by smFRET Microscopy. Methods in Enzymology, 2014, 549, 375-406. doi: 10.1016/b978-0-12-801122-5.00016-7
  51. Stuart, C.H.; Horita, D.A.; Thomas, M.J.; Salsbury, F.R.; Lively, M.O.; Gmeiner, W.H. Site-Specific DNA-Doxorubicin Conjugates Display Enhanced Cytotoxicity to Breast Cancer Cells. Bioconjugate Chemistry, 2014, 25(2), 406-413. doi: 10.1021/bc4005427
  52. Teske, N.S.; Voigt, J.; Shastri, V.P. Clickable Degradable Aliphatic Polyesters via Copolymerization with Alkyne Epoxy Esters: Synthesis and Postfunctionalization with Organic Dyes. Journal of the American Chemical Society, 2014, 136(29), 10527-10533. doi: 10.1021/ja505629w
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  54. Viehweger, K.; Barbaro, L.; García, K.P.; Joshi, T.; Geipel, G.; Steinbach, J.; Stephan, H.; Spiccia, L.; Graham, B. EGF Receptor-Targeting Peptide Conjugate Incorporating a Near-IR Fluorescent Dye and a Novel 1,4,7-Triazacyclononane-Based 64Cu(II) Chelator Assembled via Click Chemistry. Bioconjugate Chemistry, 2014, 25(5), 1011-1022. doi: 10.1021/bc5001388
  55. Wang, W.; Ji, X.; Na, H.B.; Safi, M.; Smith, A.; Palui, G.; Perez, J.M.; Mattoussi, H. Design of a Multi-Dopamine-Modified Polymer Ligand Optimally Suited for Interfacing Magnetic Nanoparticles with Biological Systems. Langmuir, 2014, 30(21), 6197-6208. doi: 10.1021/la500974r
  56. Wang, X.; Yang, Y.; Jia, H.; Jia, W.; Miller, S.; Bowman, B.; Feng, J.; Zhan, F. Peptide decoration of nanovehicles to achieve active targeting and pathology-responsive cellular uptake for bone metastasis chemotherapy. Biomaterials Science, 2014, 2(7), 961-971. doi: 10.1039/c4bm00020j
  57. Xie, M.; Xu, Y.; Shen, H.; Shen, S.; Ge, Y.; Xie, J. Negative-charge-functionalized mesoporous silica nanoparticles as drug vehicles targeting hepatocellular carcinoma. International Journal of Pharmaceutics, 2014, 474, 223-231. doi: 10.1016/j.ijpharm.2014.08.027
  58. Zhang, R.; Yang, J.; Sima, M.; Zhou, Y.; Kopeček, J. Sequential combination therapy of ovarian cancer with degradable N-(2-hydroxypropyl)methacrylamide copolymer paclitaxel and gemcitabine conjugates. Proceedings of the National Academy of Sciences of the U.S.A., 2014, 111(33), 12181-12186. doi: 10.1073/pnas.1406233111
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  60. Zhao, Y.; Meek, G.A.; Levine, B.G.; Lunt, R.R. Near-Infrared Harvesting Transparent Luminescent Solar Concentrators. Advanced Optical Materials, 2014, 2(7), 606-611. doi: 10.1002/adom.201400103
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2013

  1. Joshi, R.; Feldmann, V.; Koestner, W.; Detje, C.; Gottschalk, S.; Mayer, H.A.; Sauer, M.G.; Engelmann, J. Multifunctional silica nanoparticles for optical and magnetic resonance imaging. Biological Chemistry, 2013, 394(1), 125–135. doi: 10.1515/hsz-2012-0251
  2. Skaat, H.; Corem-Salkmon, E.; Grinberg, I.; Last, D.; Goez, D.; Mardor, Y.; Margel, S. Antibody-conjugated, dual-modal, near-infrared fluorescent iron oxide nanoparticles for antiamyloidgenic activity and specific detection of amyloid-β fibrils. International Journal of Nanomedicine, 2013, 8, 4063–4076. doi: 10.2147/ijn.s52833
  3. Myung, J.-K.; Banuelos, C.A.; Fernandez, J.G.; Mawji, N.R.; Wang, J.; Tien, A.H.; Yang, Y.C.; Tavakoli, I.; Haile, S.; Watt, K.; McEwan, I.J.; Plymate, S.; Andersen, R.J.; Sadar, M.D. An androgen receptor N-terminal domain antagonist for treating prostate cancer. Journal of Clinical Investigation, 2013, 123(7), 2948–2960. doi: 10.1172/jci66398
  4. Chan, L.J.; Smith, C.M.; Chua, B.E.; Lin, F.; Bathgate, R.A.D.; Separovic, F.; Gundlach, A.L.; Hossain, M.A.; Wade, J.D. Synthesis of fluorescent analogs of relaxin family peptides and their preliminary in vitro and in vivo characterization. Frontiers in Chemistry, 2013, 1, Article 30. doi: 10.3389/fchem.2013.00030
  5. Petkau-Milroy, K.; Sonntag, M.; Colditz, A.; Brunsveld, L. Multivalent Protein Assembly Using Monovalent Self-Assembling Building Blocks. International Journal of Molecular Sciences, 2013, 14(10), 21189–21201. doi: 10.3390/ijms141021189
  6. Lee, A.; Chin, J.; Park, O.K.; Chung, H.; Kim, J.W.; Yoon, S.-Y.; Park, K. A novel near-infrared fluorescence chemosensor for copper ion detection using click ligation and energy transfer. Chemical Communications, 2013, 49, 5969–5971. doi: 10.1039/c3cc42059k
  7. Shabanpoor, F.; Gait, M.J. Development of a general methodology for labelling peptide–morpholino oligonucleotide conjugates using alkyne–azide click chemistry. Chemical Communications, 2013, 49, 10260–10262. doi: 10.1039/c3cc46067c
  8. Jain, D.; Siede, W. Rad5 Template Switch Pathway of DNA Damage Tolerance Determines Synergism between Cisplatin and NSC109268 in Saccharomyces cerevisiae. PLoS ONE, 2013, 8(10), e77666. doi: 10.1371/journal.pone.0077666
  9. Lee, S.; Ashizawa, A.T.; Kim, K.S.; Falk, D.J.; Notterpek, L. Liposomes to Target Peripheral Neurons and Schwann Cells. PLoS ONE, 2013, 8(11), e78724. doi: 10.1371/journal.pone.0078724
  10. Albertazzi, L.; Martinez-Veracoechea, F.J.; Leenders, C.M.A.; Voets, I.K.; Frenkel, D.; Meijer, E.W. Spatiotemporal control and superselectivity in supramolecular polymers using multivalency. Proceedings of the National Academy of Sciences of the U.S.A., 2013, 110(30), 12203-12208. doi: 10.1073/pnas.1303109110
  11. Aldeek, F.; Muhammed, M.A.H.; Palui, G.; Zhan, N.; Mattoussi, H. Growth of Highly Fluorescent Polyethylene Glycol- and Zwitterion-Functionalized Gold Nanoclusters. ACS Nano, 2013, 7(3), 2509-2521. doi: 10.1021/nn305856t
  12. Astakhova, I.K.; Hansen, L.H.; Vester, B.; Wengel, J. Peptide-LNA oligonucleotide conjugates. Organic & Biomolecular Chemistry, 2013, 11(25), 4240-4240. doi: 10.1039/c3ob40786a
  13. Astakhova, I.K.; Santhosh Kumar, T.; Campbell, M.A.; Ustinov, A.V.; Korshun, V.A.; Wengel, J. Branched DNA nanostructures efficiently stabilised and monitored by novel pyrene-perylene 2'-alpha-L-amino-LNA FRET pairs. Chemical Communications, 2013, 49(5), 511-511. doi: 10.1039/c2cc37547h
  14. Astakhova, I.K.; Wengel, J. Interfacing Click Chemistry with Automated Oligonucleotide Synthesis for the Preparation of Fluorescent DNA Probes Containing Internal Xanthene and Cyanine Dyes. Chemistry - a European Journal, 2013, 19(3), 1112-1122. doi: 10.1002/chem.201202621
  15. Cao, Z.; Partyka, K.; McDonald, M.; Brouhard, E.; Hincapie, M.; Brand, R.E.; Hancock, W.S.; Haab, B.B. Modulation of Glycan Detection on Specific Glycoproteins by Lectin Multimerization. Analytical Chemistry, 2013, 85(3), 1689-1698. doi: 10.1021/ac302826a
  16. Chang, Y.; Cai, C.; Li, L.; Miao, J.; Ucakturk, E.; Li, G.; Ly, M.; Linhardt, R.J. Ultrasensitive Detection and Quantification of Acidic Disaccharides Using Capillary Electrophoresis and Quantum Dot-Based Fluorescence Resonance Energy Transfer. Analytical Chemistry, 2013, 85(19), 9356-9362. doi: 10.1021/ac402242v
  17. Cheng, M.-C.; Leske, A.T.; Matsuoka, T.; Kim, B.C.; Lee, J.; Burns, M.A.; Takayama, S.; Biteen, J.S. Super-Resolution Imaging of PDMS Nanochannels by Single-Molecule Micelle-Assisted Blink Microscopy. The Journal of Physical Chemistry B, 2013, 117(16), 4406-4411. doi: 10.1021/jp307635v
  18. Damayanti, N.P.; Parker, L.L.; Irudayaraj, J.M.K. Fluorescence Lifetime Imaging of Biosensor Peptide Phosphorylation in Single Live Cells. Angewandte Chemie International Edition, 2013, 52(14), 3931-3934. doi: 10.1002/anie.201209303
  19. Gluz, E.; Grinberg, I.; Corem-Salkmon, E.; Mizrahi, D.; Margel, S. Engineering of new crosslinked near-infrared fluorescent polyethylene glycol bisphosphonate nanoparticles for bone targeting. Journal of Polymer Science, Part A: Polymer Chemistry, 2013, 51(20), 4282-4291. doi: 10.1002/pola.26858
  20. Gluz, E.; Mizrahi, D.M.; Margel, S. Synthesis and characterization of new poly(ethylene glycol)bisphosphonate vinylic monomer and non-fluorescent and NIR-fluorescent bisphosphonate micrometer-sized particles. Polymer, 2013, 54(2), 565-571. doi: 10.1016/j.polymer.2012.11.071
  21. Haller, A.; Altman, R.B.; Souliere, M.F.; Blanchard, S.C.; Micura, R. Folding and ligand recognition of the TPP riboswitch aptamer at single-molecule resolution. Proceedings of the National Academy of Sciences of the U.S.A., 2013, 110(11), 4188-4193. doi: 10.1073/pnas.1218062110
  22. Hartley, M.D.; Schneggenburger, P.E.; Imperiali, B. Lipid bilayer nanodisc platform for investigating polyprenol-dependent enzyme interactions and activities. Proceedings of the National Academy of Sciences of the U.S.A., 2013, 110(52), 20863-20870. doi: 10.1073/pnas.1320852110
  23. He, H.; Chen, S.; Zhou, J.; Dou, Y.; Song, L.; Che, L.; Zhou, X.; Chen, X.; Jia, Y.; Zhang, J. et al. Cyclodextrin-derived pH-responsive nanoparticles for delivery of paclitaxel. Biomaterials, 2013, 34(21), 5344-5358. doi: 10.1016/j.biomaterials.2013.03.068
  24. Kaastrup, K.; Chan, L.; Sikes, H.D. Impact of Dissociation Constant on the Detection Sensitivity of Polymerization-Based Signal Amplification Reactions. Analytical Chemistry, 2013, 85(17), 8055-8060. doi: 10.1021/ac4018988
  25. Kim, J.; Seo, M.-H.; Lee, S.; Cho, K.; Yang, A.; Woo, K.; Kim, H.-S.; Park, H.-S. Simple and Efficient Strategy for Site-Specific Dual Labeling of Proteins for Single-Molecule Fluorescence Resonance Energy Transfer Analysis. Analytical Chemistry, 2013, 85(3), 1468-1474. doi: 10.1021/ac303089v
  26. Lee, B.-S.; Amano, T.; Wang, H.Q.; Pantoja, J.L.; Yoon, C.W.; Hanson, C.J.; Amatya, R.; Yen, A.; Black, K.L.; Yu, J.S. Reactive Oxygen Species Responsive Nanoprodrug to Treat Intracranial Glioblastoma. ACS Nano, 2013, 7(4), 3061-3077. doi: 10.1021/nn400347j
  27. Lu, H.D.; Soranno, D.E.; Rodell, C.B.; Kim, I.L.; Burdick, J.A. Secondary Photocrosslinking of Injectable Shear-Thinning Dock-and-Lock Hydrogels. Advanced Healthcare Materials, 2013, 2(7), 1028-1036. doi: 10.1002/adhm.201200343
  28. Lu, X.; Song, C.-X.; Szulwach, K.; Wang, Z.; Weidenbacher, P.; Jin, P.; He, C. Chemical Modification-Assisted Bisulfite Sequencing (CAB-Seq) for 5-Carboxylcytosine Detection in DNA. Journal of the American Chemical Society, 2013, 135(25), 9315-9317. doi: 10.1021/ja4044856
  29. Mohan, K.; Donavan, K.C.; Arter, J.A.; Penner, R.M.; Weiss, G.A. Sub-nanomolar Detection of Prostate-Specific Membrane Antigen in Synthetic Urine by Synergistic, Dual-Ligand Phage. Journal of the American Chemical Society, 2013, 135(20), 7761-7767. doi: 10.1021/ja4028082
  30. Morton, S.W.; Herlihy, K.P.; Shopsowitz, K.E.; Deng, Z.J.; Chu, K.S.; Bowerman, C.J.; DeSimone, J.M.; Hammond, P.T. Scalable Manufacture of Built-to-Order Nanomedicine: Spray-Assisted Layer-by-Layer Functionalization of PRINT Nanoparticles. Advanced Materials, 2013, 25(34), 4707-4713. doi: 10.1002/adma.201302025
  31. Potapova, I.; Eglin, D.; Laschke, M.W.; Bischoff, M.; Richards, R.G.; Moriarty, T.F. Two-step labeling of Staphylococcus aureus with Lysostaphin-Azide and DIBO-Alexa using click chemistry. Journal of Microbiological Methods, 2013, 92(1), 90-98. doi: 10.1016/j.mimet.2012.11.004
  32. Rimpelová, S.; Bříza, T.; Králová, J.; Záruba, K.; Kejík, Z.; Císařová, I.; Martásek, P.; Ruml, T.; Král, V. Rational Design of Chemical Ligands for Selective Mitochondrial Targeting. Bioconjugate Chemistry, 2013, 24(9), 1445-1454. doi: 10.1021/bc400291f
  33. Saxena, T.; Karumbaiah, L.; Gaupp, E.A.; Patkar, R.; Patil, K.; Betancur, M.; Stanley, G.B.; Bellamkonda, R.V. The impact of chronic blood-brain barrier breach on intracortical electrode function. Biomaterials, 2013, 34(20), 4703-4713. doi: 10.1016/j.biomaterials.2013.03.007
  34. Sellrie, F.; Graser, E.; Lenz, C.; Hillebrand, T.; Schenk, J.A. Specific DNA detection using antibody mediated fluorescencequenching. Biosensors and Bioelectronics, 2013, 42, 512-515. doi: 10.1016/j.bios.2012.10.055
  35. Shen, H.; Shi, H.; Xie, M.; Ma, K.; Li, B.; Shen, S.; Wang, X.; Jin, Y. Biodegradable chitosan/alginate BSA-gel-capsules for pH-controlled loading and release of doxorubicin and treatment of pulmonary melanoma. Journal of Materials Chemistry B, 2013, 1(32), 3906-3906. doi: 10.1039/c3tb20330a
  36. Sloniec, J.; Resch-Genger, U.; Hennig, A. Photophysics and Release Kinetics of Enzyme-Activatable Optical Probes Based on H-Dimerized Fluorophores on Self-Immolative Linkers. The Journal of Physical Chemistry B, 2013, 117(46), 14336-14344. doi: 10.1021/jp409388b
  37. Soulière, M.F.; Altman, R.B.; Schwarz, V.; Haller, A.; Blanchard, S.C.; Micura, R. Tuning a riboswitch response through structural extension of a pseudoknot. Proceedings of the National Academy of Sciences of the U.S.A., 2013, 110(35), E3256-E3264. doi: 10.1073/pnas.1304585110
  38. Tang, H.; Sampath, P.; Yan, X.; Thorne, S.H. Potential for enhanced therapeutic activity of biological cancer therapies with doxycycline combination. Gene Therapy, 2013, 20(7), 770-778. doi: 10.1038/gt.2012.96
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  40. Xie, M.; Shi, H.; Li, Z.; Shen, H.; Ma, K.; Li, B.; Shen, S.; Jin, Y. A multifunctional mesoporous silica nanocomposite for targeted delivery, controlled release of doxorubicin and bioimaging. Colloids and Surfaces B: Biointerfaces, 2013, 110, 138-147. doi: 10.1016/j.colsurfb.2013.04.009
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  43. Yuan, H.; Cho, H.; Chen, H.H.; Panagia, M.; Sosnovik, D.E.; Josephson, L. Fluorescent and radiolabeled triphenylphosphonium probes for imaging mitochondria. Chemical Communications, 2013, 49(88), 10361-10363. doi: 10.1039/c3cc45802d
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  47. Xie, M.; Shi, H.; Ma, K.; Shen, H.; Li, B.; Shen, S.; Wang, X.; Jin, Y. Hybrid nanoparticles for drug delivery and bioimaging: Mesoporous silica nanoparticles functionalized with carboxyl groups and a near-infrared fluorescent dye. Journal of Colloid and Interface Science, 2013, 395, 306-314. doi: 10.1016/j.jcis.2013.01.001

2012

  1. Liboska, R.; Ligasová, A.; Strunin, D.; Rosenberg, I.; Koberna, K. Most Anti-BrdU Antibodies React with 2'-Deoxy-5-Ethynyluridine ‒ The Method for the Effective Suppression of This Cross-Reactivity. PLoS ONE, 2012, 7(12), e51679. doi: 10.1371/journal.pone.0051679
  2. Liu, Z.; Miller, S.J.; Joshi, B.P.; Wang, T.D. In vivo targeting of colonic dysplasia on fluorescence endoscopy with near-infrared octapeptide. Gut, 2012, 62(3), 395-403. doi: 10.1136/gutjnl-2011-301913
  3. Adulnirath, A.; Chung, S.W.; Park, J.; Hwang, S.R.; Kim, J.-Y.; Yang, V.C.; Kim, S.Y.; Moon, H.T.; Byun, Y. Cyclic RGDyk-conjugated LMWH-taurocholate derivative as a targeting angiogenesis inhibitor. Journal of Controlled Release, 2012, 164(1), 8-16. doi: 10.1016/j.jconrel.2012.10.001
  4. Fan, H.; Zhang, I.; Chen, X.; Zhang, L.; Wang, H.; Da Fonseca, A.; Manuel, E.R.; Diamond, D.J.; Raubitschek, A.; Badie, B. Intracerebral CpG Immunotherapy with Carbon Nanotubes Abrogates Growth of Subcutaneous Melanomas in Mice. Clinical Cancer Research, 2012, 18(20), 5628-5638. doi: 10.1158/1078-0432.ccr-12-1911
  5. Gatzogiannis, E.; Chen, Z.; Wei, L.; Wombacher, R.; Kao, Y.-T.; Yefremov, G.; Cornish, V.W.; Min, W. Mapping protein-specific micro-environments in live cells by fluorescence lifetime imaging of a hybrid genetic-chemical molecular rotor tag. Chemical Communications, 2012, 48(69), 8694-8694. doi: 10.1039/c2cc33133k
  6. Kaastrup, K.; Sikes, H.D. Polymerization-based signal amplification under ambient conditions with thirty-five second reaction times. Lab on a Chip, 2012, 12(20), 4055-4055. doi: 10.1039/c2lc40584a
  7. Kim, J.-y.; Shim, G.; Choi, H.-w.; Park, J.; Chung, S.W.; Kim, S.; Kim, K.; Chan Kwon, I.; Kim, C.-W.; Kim, S.Y. et al. Tumor vasculature targeting following co-delivery of heparin-taurocholate conjugate and suberoylanilide hydroxamic acid using cationic nanolipoplex. Biomaterials, 2012, 33(17), 4424-4430. doi: 10.1016/j.biomaterials.2012.02.066
  8. Kim, W.-J.; Kim, A.; Huh, C.; Park, C.W.; Ah, C.S.; Kim, B.K.; Yang, J.-H.; Chung, K.H.; Choi, Y.H.; Hong, J. et al. Photo selective protein immobilization using bovine serum albumin. Applied Surface Science, 2012, 261, 880-889. doi: 10.1016/j.apsusc.2012.08.111
  9. Kovacic, S.; Samii, L.; Woolfson, D.N.; Curmi, P.M.G.; Linke, H.; Forde, N.R.; Blab, G.A. Design and Construction of a One-Dimensional DNA Track for an Artificial Molecular Motor. Journal of Nanomaterials, 2012, 2012, ID-ID 109238. doi: 10.1155/2012/109238
  10. McGouran, J.F.; Kramer, H.B.; Mackeen, M.M.; di Gleria, K.; Altun, M.; Kessler, B.M. Fluorescence-based active site probes for profiling deubiquitinating enzymes. Organic & Biomolecular Chemistry, 2012, 10(17), 3379-3379. doi: 10.1039/c2ob25258a
  11. Meimetis, L.G.; Williams, D.E.; Mawji, N.R.; Banuelos, C.A.; Lal, A.A.; Park, J.J.; Tien, A.H.; Fernandez, J.G.; de Voogd, N.J.; Sadar, M.D. et al. Niphatenones, Glycerol Ethers from the Sponge Niphates digitalis Block Androgen Receptor Transcriptional Activity in Prostate Cancer Cells: Structure Elucidation, Synthesis, and Biological Activity . Journal of Medicinal Chemistry, 2012, 55(1), 503-514. doi: 10.1021/jm2014056
  12. Molinari, C.E.; Casadio, Y.S.; Hartmann, B.T.; Livk, A.; Bringans, S.; Arthur, P.G.; Hartmann, P.E. Proteome Mapping of Human Skim Milk Proteins in Term and Preterm Milk. Journal of Proteome Research, 2012, 11(3), 1696-1714. doi: 10.1021/pr2008797
  13. Pecqueur, L.; Duellberg, C.; Dreier, B.; Jiang, Q.; Wang, C.; Pluckthun, A.; Surrey, T.; Gigant, B.; Knossow, M. A designed ankyrin repeat protein selected to bind to tubulin caps the microtubule plus end. Proceedings of the National Academy of Sciences of the U.S.A., 2012, 109(30), 12011-12016. doi: 10.1073/pnas.1204129109
  14. Preus, S.; Wilhelmsson, L.M. Advances in Quantitative FRET-Based Methods for Studying Nucleic Acids. ChemBioChem, 2012, 13(14), 1990-2001. doi: 10.1002/cbic.201200400
  15. Sparks, J.; Slobodkin, G.; Matar, M.; Congo, R.; Ulkoski, D.; Rea-Ramsey, A.; Pence, C.; Rice, J.; McClure, D.; Polach, K.J. et al. Versatile cationic lipids for siRNA delivery. Journal of Controlled Release, 2012, 158(2), 269-276. doi: 10.1016/j.jconrel.2011.11.006
  16. Truong, F.; Yoo, T.H.; Lampo, T.J.; Tirrell, D.A. Two-Strain, Cell-Selective Protein Labeling in Mixed Bacterial Cultures. Journal of the American Chemical Society, 2012, 134(20), 8551-8556. doi: 10.1021/ja3004667
  17. Zhou, K.; Liu, H.; Zhang, S.; Huang, X.; Wang, Y.; Huang, G.; Sumer, B.D.; Gao, J. Multicolored pH-Tunable and Activatable Fluorescence Nanoplatform Responsive to Physiologic pH Stimuli. Journal of the American Chemical Society, 2012, 134(18), 7803-7811. doi: 10.1021/ja300176w
  18. Zolotarskaya, O.Y.; Wagner, A.F.; Beckta, J.M.; Valerie, K.; Wynne, K.J.; Yang, H. Synthesis of Water-Soluble Camptothecin-Polyoxetane Conjugates via Click Chemistry. Molecular Pharmaceutics, 2012, 9(11), 3403-3408. doi: 10.1021/mp3005066

2011

  1. Zhao, D.; Alizadeh, D.; Zhang, L.; Liu, W.; Farrukh, O.; Manuel, E.; Diamond, D.J.; Badie, B. Carbon Nanotubes Enhance CpG Uptake and Potentiate Antiglioma Immunity. Clinical Cancer Research, 2011, 17(4), 771–782. doi: 10.1158/1078-0432.ccr-10-2444
  2. Ranasinghe, R.T.; Brown, T. Ultrasensitive fluorescence-based methods for nucleic acid detection: towards amplification-free genetic analysis. Chemical Communications, 2011, 47(13), 3717-3735. doi: 10.1039/c0cc04215c
  3. Song, C.-X.; Sun, Y.; Dai, Q.; Lu, X.-Y.; Yu, M.; Yang, C.-G.; He, C. Detection of 5-Hydroxymethylcytosine in DNA by Transferring a Keto-Glucose by Using T4 Phage beta-Glucosyltransferase. ChemBioChem, 2011, 12(11), 1682-1685. doi: 10.1002/cbic.201100278
  4. Song, C.-X.; Yu, M.; Dai, Q.; He, C. Detection of 5-hydroxymethylcytosine in a combined glycosylation restriction analysis (CGRA) using restriction enzyme Taq[alpha]I. Bioorganic & Medicinal Chemistry Letters, 2011, 21(17), 5075-5077. doi: 10.1016/j.bmcl.2011.03.118

2010

  1. Paredes, E.; Das, S.R. Click Chemistry for Rapid Labeling and Ligation of RNA. ChemBioChem, 2010, 12(1), 125-131. doi: 10.1002/cbic.201000466
  2. Ranall, M.; Gabrielli, B.; Gonda, T. Adaptation and validation of DNA synthesis detection by fluorescent dye derivatization for high-throughput screening. BioTechniques, 2010, 48(5), 379-386. doi: 10.2144/000113410
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