Antibody labeling kits

The kit is used for the preparation of labeled antibodies having 2.5-3 labels per antibody. The kit contains all reagents and materials for ten labeling reactions, each for 100 ug of the antibody. The dye is an NHS ester, taken in controlled excess. It reacts with the amine groups of lysines the antibody at mild alkaline pH. The purification of the antibody is achieved by gel filtration using spin columns. These kits contain sulfonated, water soluble dyes, that are most suitable for the labeling of sensitive proteins, including antibodies.

Kit components

Kit component Count
1321-10rxn
10 reactions
3321-10rxn
10 reactions
7321-10rxn
10 reactions
5321-10rxn
10 reactions
6321-10rxn
10 reactions
N1320, Sulfo-Cyanine3 NHS ester, 1 rxn 10
N3320, Sulfo-Cyanine5 NHS ester, 1 rxn 10
N7320, Sulfo-Cyanine5.5 NHS ester, 1 rxn 10
N5320, Sulfo-Cyanine7 NHS ester, 1 rxn 10
N6320, Sulfo-Cyanine7.5 NHS ester, 1 rxn 10
15050, DMSO, labeling grade, 1 mL 1 1 1 1 1
1584-05mL, Sodium azide solution, 3%, 0.5 mL 1 1 1 1 1
1689-15mL, Sodium bicarbonate, 126 mg 1 1 1 1 1
Desalting spin column, PBS 10 10 10 10 10
Desalting receptacle vial, 1.5 mL 10 10 10 10 10
Desalting waste vial, 2 mL 10 10 10 10 10
PBS tablet, for 100 mL of buffer 1 1 1 1 1

Store at temperature between +3 °C and +20 °C. Do not freeze!

Shelf life 12 months

Protocol

1. Antibody preparation.

Optimal conditions for the labeling reaction are the following: antibody at a concentration of 1 mg/mL dissolved in 0.1 M sodium hydrocarbonate solution. Sodium azide is compatible with the labeling. If concentration of antibody is below 1 mg/mL, it should be concentrated. Antibody preparation should be free of aminoacids, proteins like BSA and buffer components that bring pH to unfavourable (2-7.5 or 9-12) ranges.

2. Setting up the reaction.

2.1. Add a solution of antibody in sodium hydrocarbonate (100 ug in 100 uL*) to the fluorophore, vortex, and incubate for 30 min at room temperature.

* if a smaller amount of antibody is to be labeled, dissolve lyophilized dye in 10 uL of anhydrous DMSO, and take 1 uL of the solution per 10 ug of antibody. The solution of dye in DMSO should be consumed immediately.

3. Purification of the labeled antibody.

3.1. Prepare the column. The column should be at room temperature prior to use. The gel should be resuspended using vortex. Put the column into a waste receptacle (without cap), and centrifuge for 2 min at 1,000 g (speed must be carefully controlled - for standard 6 cm rotor, 1,000 g = 3800 rpm). The small bulge of the column should be oriented outwards.

3.2. Apply 400 uL of 1x PBS buffer, centrifuge for 2 min at 1,000 g.

3.3. Remove the column from waste receptacle. Put it into collection tube (with cap). Apply 100 uL of the reaction mixture onto the column, incubate for 1 min, and elute the antibody by centrifugation for 2 min at 1,000 g. Add 1/100 volume of 100x sodium azide. Antibodies can be aliquoted to improve their shelf life. Current aliquot can be stored at +4°С the rest at -20°С.

4. Measurement of dye to antibody ratio.

To calculate dye to antibody ratio, measure absorption spectrum of the conjugate, or absorption at 280 nm (AAB), and at dye absorption maximum (ADye). A typical absorption spectrum of a dye labeled antibody is shown below. Depending on the dye, wavelength of the maximum may vary.

Labeled antibody absorption spectrum

An absorption spectrum of a labeled antibody contains dye peak (with longer wavelength), and antibody peak (at around 280 nm). Dye to antibody ratio is calculated using the following formula:

Calculation of dye to antibody ratio

with Dye/AB - average number of fluorophores per antibody molecule, Adye - optical density of the sample at dye absorption maximum, AAB - sample optical density at 280 nm, εAB - molar extinction coefficient of antibody at 280 nm (210,000 for IgG), εDye - molar extinction coefficient of dye at absorption maximum (see table below), CF280 - correction factor for dye (see table below).

Dyeλmax, nmεCF280
sulfo-Cyanine3548162,0000.06
sulfo-Cyanine5646271,0000.04
sulfo-Cyanine5.5673195,0000.11
sulfo-Cyanine7750240,6000.04
sulfo-Cyanine7.5778222,0000.09

Example of calculation

After labeling of IgG antibody with sulfo-Cyanine5 and purification, a solution has been obtained with absorption spectrum above. Determine dye to protein ratio.

Using absorption spectrum, the following values can be found: ADye = 0.184 at dye absorption maximum (646 nm, see the table), AAB = 0.066 (at 280 nm), εAB = 210000 for IgG; εDye = 271,000, and CF280 = 0.04.

Dye/AB - is 2.43 fluorophore molecules per antibody.

Interpretation of results, and antibody storage

In most cases, optimal dye to antibody ratio is 2-3 dye molecules per antibody. Increase of dye loading above this value does not improve fluorescent signal because of the concentrational quenching of the fluorescence. When too few fluorophores are attached during the reaction, decrease antibody loading per reaction. Use of expired kit can also lead to this result.

We recommend to test binding of labeled antibodies with their antigens. The labeled antibodies can be stored at -20°С. An aliquot that is currently in use, should be stored at +4°С to avoid freeze-thaw cycles. The stability of the conjugate is determined by antibody itself rather than fluorophore or the chemical bond. Labeled antibodies should not be exposed to direct sunlight for extended time, but tolerate ambient lighting well.

Related kits

sulfo-Cyanine3 antibody labeling kit

Ready to use kit for the labeling of antibodies (other proteins can be labeled as well) with sulfo-Cyanine3 dye via NHS ester chemistry. The kit contains all necessary chemicals and consumables.
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sulfo-Cyanine5 antibody labeling kit

A kit for the labeling of antibodies with sulfo-Cyanine5 dye, a fluorophore for Cy5 channel.
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sulfo-Cyanine5.5 antibody labeling kit

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sulfo-Cyanine7 antibody labeling kit

A kit for the labeling of antibodies with sulfo-Cyanine7 dye, a fluorophore for Cy7 channel.
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sulfo-Cyanine7.5 antibody labeling kit

A kit for the labeling of antibodies with sulfo-Cyanine7.5 dye, a fluorophore for Cy7.5 channel.
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